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Name : Pput_3912 (Pput_3912) Accession : YP_001269220.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Virulence Product : capsule polysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3563 EC number : - Position : 4396024 - 4398045 bp Length : 2022 bp Strand : + Note : PFAM: Capsule polysaccharide biosynthesis protein DNA sequence : ATGGACGACGCTTCGCCCCGCCCTCGCCTGCTGATCCTGTCAAAAGGAGCCCAGCGCATCAGTACGTTGCCTGCCTTGCT GCCCGAATTCGCGCTGCAAAGCGGTGCTGTGCGCGATGTCGAGCTCGCCGATTGGGTAATGGCCTGGGGCCGCAAGCCAA GCGCCATCAAGGCAATGGCCGAGGCGCACAAGGCAGGCAAACCCGTTCTCACGCTGGAAGACGGCTTCATCCGTTCCGTG GGCCTGGGCGCCGACGAGCCGCCCCTGTCGCTGATCGTCGATGACGTGGGCGTGTACTACGACGCTTCCCAGCCGTCCCG CCTCGAACAGTTGATCGCCACGCCCCTCGACGCCGAGCAAACCCAACGTGCCCTGGCACTACGTAGCCTGTGGCAGCAGC AACGGGTGTCGAAGTACAACGACGCACGCATCGAACTGCCAGCGCTGCCGGCCGACTGCGTGCTGGTGGCCGACCAGACC TGTGGCGATGCCTCGTTGCAAGGTGCAGGGGCCAGCGACTTCCGGGCCATGCTGGAGGCGGCATTGGCCCGCTACCCGCA TAGCACCATCGTGCTCAAGGTGCACCCCGACGTGGTGGCCGGGCGCAAGGCCGGGCACTTCGACCTGGCAGCGCTGGCCG GCAACCCGCGGGTGCAGGTACTGGCCCACAATGTTCACCCGGCCGATTTGCTGCCACGCATGCGTGCAGTGTTCGTGATG ACGTCGCAATTGGGCTTCGATGCCTTGCTTTGGGACGTACCGGTGCACACCTGGGGCATGCCGTTCTATGCCGGCTGGGG GCTGACCGACGACCGCTTGCCGGCACCTTCACGCCGCAAGCCTGTGCCGTTGGCGCAACTGATTCATGCCAGCCTGGTGG CCTACCCGCGCTATGTCTGCCCAGAACGTGGTCAGCCGTGTACGCCAGAGGTGCTGATCAACTGGCTGGGCCTGCAACGG CGGCACCGCAGCGTGTTGCCAAACACCGTACAGATGCTGGGTTTCAGCCGCTGGAAAGAACCGCTGGCAAACCTGTTTTT CAATGGCGCGGCCATTCGCTTCGTCAAGCCCGAGCAACCGCTGGCGCAAGACTTGCCCGTGGTGTCCTGGGGCTGCAAGC ACGACACTCACCTTTGCGCCCACCCACTGCCCGTCAACCGGGTGGAAGACGGCTTTCTGCGCTCGGTCGGCCTGGGCGCC GGCAAGGCGCGACCGTTGTCGTGGGTGGTCGATGACCTGGGTATTTACTACGACGCCACCCGGCCTTCGCGCCTGGAGCG CATCCTGGCTGAAGAGCCCTTCGACCCGCAGTTGTTGGCCCGCGCGCATGCTTTGCGCCTGGCCATCTGCGCGGCGGGGC TGACCAAGTACAACTTGCCCGGCGCCAGCTGGCAGCGCCCCTCGCATGCGCAACGGGTGATCCTGGTGCCTGGCCAGGTG GAGGGCGATGCGTCCATCCGCTTTGGCGGCAACCGTATCCGCAGCAACCTGCAACTGCTGCGCGCCGTGCGTGAGCAAAA CCCTGATGCGTGGGTGTTGTACAAACCCCACCCAGAGGTATTGGCCGGCACGCGCGCCCGCGGTGACGACGAAGCGCAAA CCGTGCACTGGTGCGATGAAGTGATCGGCGATACGCCACTGCAGCAATTGCTGGAAGTGGTCGACGAATTGCATGTGCTG ACCTCGCAGTCGGGCTTCGAGGCCCTGCTGCGCGGTGTGCCGGTGACGACCTATGGCCAGCCGTTCTACGCCGGCTGGGG GCTGACCCGCGACATGGACCTTCAAGCACCGGTGCAGGCACGGCGCAGCCGACAACTGACGCTGGACCAGTTGGTAGCGG GAACGCTGCTGCTCTACCCCACTTACGTAAGCCTGGTGACCAACCGCTTCACCACCGCCGAACGAACCTTATACGAACTA CAAAATTGGCACGCCTTACCGCAGCCTGGAGCGCCCTCCCGATGGCAGGACTTGAAACGACGCTTGAGCAGTTTGTTGGG CAGGAAGCGCCCGACCAACTGA Protein sequence : MDDASPRPRLLILSKGAQRISTLPALLPEFALQSGAVRDVELADWVMAWGRKPSAIKAMAEAHKAGKPVLTLEDGFIRSV GLGADEPPLSLIVDDVGVYYDASQPSRLEQLIATPLDAEQTQRALALRSLWQQQRVSKYNDARIELPALPADCVLVADQT CGDASLQGAGASDFRAMLEAALARYPHSTIVLKVHPDVVAGRKAGHFDLAALAGNPRVQVLAHNVHPADLLPRMRAVFVM TSQLGFDALLWDVPVHTWGMPFYAGWGLTDDRLPAPSRRKPVPLAQLIHASLVAYPRYVCPERGQPCTPEVLINWLGLQR RHRSVLPNTVQMLGFSRWKEPLANLFFNGAAIRFVKPEQPLAQDLPVVSWGCKHDTHLCAHPLPVNRVEDGFLRSVGLGA GKARPLSWVVDDLGIYYDATRPSRLERILAEEPFDPQLLARAHALRLAICAAGLTKYNLPGASWQRPSHAQRVILVPGQV EGDASIRFGGNRIRSNLQLLRAVREQNPDAWVLYKPHPEVLAGTRARGDDEAQTVHWCDEVIGDTPLQQLLEVVDELHVL TSQSGFEALLRGVPVTTYGQPFYAGWGLTRDMDLQAPVQARRSRQLTLDQLVAGTLLLYPTYVSLVTNRFTTAERTLYEL QNWHALPQPGAPSRWQDLKRRLSSLLGRKRPTN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 1e-86 | 45 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 1e-86 | 45 |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 3e-102 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pput_3912 | YP_001269220.1 | capsule polysaccharide biosynthesis protein | VFG0259 | Protein | 1e-102 | 41 |
