Gene Information

Name : Pput_3912 (Pput_3912)
Accession : YP_001269220.1
Strain : Pseudomonas putida F1
Genome accession: NC_009512
Putative virulence/resistance : Virulence
Product : capsule polysaccharide biosynthesis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3563
EC number : -
Position : 4396024 - 4398045 bp
Length : 2022 bp
Strand : +
Note : PFAM: Capsule polysaccharide biosynthesis protein

DNA sequence :
ATGGACGACGCTTCGCCCCGCCCTCGCCTGCTGATCCTGTCAAAAGGAGCCCAGCGCATCAGTACGTTGCCTGCCTTGCT
GCCCGAATTCGCGCTGCAAAGCGGTGCTGTGCGCGATGTCGAGCTCGCCGATTGGGTAATGGCCTGGGGCCGCAAGCCAA
GCGCCATCAAGGCAATGGCCGAGGCGCACAAGGCAGGCAAACCCGTTCTCACGCTGGAAGACGGCTTCATCCGTTCCGTG
GGCCTGGGCGCCGACGAGCCGCCCCTGTCGCTGATCGTCGATGACGTGGGCGTGTACTACGACGCTTCCCAGCCGTCCCG
CCTCGAACAGTTGATCGCCACGCCCCTCGACGCCGAGCAAACCCAACGTGCCCTGGCACTACGTAGCCTGTGGCAGCAGC
AACGGGTGTCGAAGTACAACGACGCACGCATCGAACTGCCAGCGCTGCCGGCCGACTGCGTGCTGGTGGCCGACCAGACC
TGTGGCGATGCCTCGTTGCAAGGTGCAGGGGCCAGCGACTTCCGGGCCATGCTGGAGGCGGCATTGGCCCGCTACCCGCA
TAGCACCATCGTGCTCAAGGTGCACCCCGACGTGGTGGCCGGGCGCAAGGCCGGGCACTTCGACCTGGCAGCGCTGGCCG
GCAACCCGCGGGTGCAGGTACTGGCCCACAATGTTCACCCGGCCGATTTGCTGCCACGCATGCGTGCAGTGTTCGTGATG
ACGTCGCAATTGGGCTTCGATGCCTTGCTTTGGGACGTACCGGTGCACACCTGGGGCATGCCGTTCTATGCCGGCTGGGG
GCTGACCGACGACCGCTTGCCGGCACCTTCACGCCGCAAGCCTGTGCCGTTGGCGCAACTGATTCATGCCAGCCTGGTGG
CCTACCCGCGCTATGTCTGCCCAGAACGTGGTCAGCCGTGTACGCCAGAGGTGCTGATCAACTGGCTGGGCCTGCAACGG
CGGCACCGCAGCGTGTTGCCAAACACCGTACAGATGCTGGGTTTCAGCCGCTGGAAAGAACCGCTGGCAAACCTGTTTTT
CAATGGCGCGGCCATTCGCTTCGTCAAGCCCGAGCAACCGCTGGCGCAAGACTTGCCCGTGGTGTCCTGGGGCTGCAAGC
ACGACACTCACCTTTGCGCCCACCCACTGCCCGTCAACCGGGTGGAAGACGGCTTTCTGCGCTCGGTCGGCCTGGGCGCC
GGCAAGGCGCGACCGTTGTCGTGGGTGGTCGATGACCTGGGTATTTACTACGACGCCACCCGGCCTTCGCGCCTGGAGCG
CATCCTGGCTGAAGAGCCCTTCGACCCGCAGTTGTTGGCCCGCGCGCATGCTTTGCGCCTGGCCATCTGCGCGGCGGGGC
TGACCAAGTACAACTTGCCCGGCGCCAGCTGGCAGCGCCCCTCGCATGCGCAACGGGTGATCCTGGTGCCTGGCCAGGTG
GAGGGCGATGCGTCCATCCGCTTTGGCGGCAACCGTATCCGCAGCAACCTGCAACTGCTGCGCGCCGTGCGTGAGCAAAA
CCCTGATGCGTGGGTGTTGTACAAACCCCACCCAGAGGTATTGGCCGGCACGCGCGCCCGCGGTGACGACGAAGCGCAAA
CCGTGCACTGGTGCGATGAAGTGATCGGCGATACGCCACTGCAGCAATTGCTGGAAGTGGTCGACGAATTGCATGTGCTG
ACCTCGCAGTCGGGCTTCGAGGCCCTGCTGCGCGGTGTGCCGGTGACGACCTATGGCCAGCCGTTCTACGCCGGCTGGGG
GCTGACCCGCGACATGGACCTTCAAGCACCGGTGCAGGCACGGCGCAGCCGACAACTGACGCTGGACCAGTTGGTAGCGG
GAACGCTGCTGCTCTACCCCACTTACGTAAGCCTGGTGACCAACCGCTTCACCACCGCCGAACGAACCTTATACGAACTA
CAAAATTGGCACGCCTTACCGCAGCCTGGAGCGCCCTCCCGATGGCAGGACTTGAAACGACGCTTGAGCAGTTTGTTGGG
CAGGAAGCGCCCGACCAACTGA

Protein sequence :
MDDASPRPRLLILSKGAQRISTLPALLPEFALQSGAVRDVELADWVMAWGRKPSAIKAMAEAHKAGKPVLTLEDGFIRSV
GLGADEPPLSLIVDDVGVYYDASQPSRLEQLIATPLDAEQTQRALALRSLWQQQRVSKYNDARIELPALPADCVLVADQT
CGDASLQGAGASDFRAMLEAALARYPHSTIVLKVHPDVVAGRKAGHFDLAALAGNPRVQVLAHNVHPADLLPRMRAVFVM
TSQLGFDALLWDVPVHTWGMPFYAGWGLTDDRLPAPSRRKPVPLAQLIHASLVAYPRYVCPERGQPCTPEVLINWLGLQR
RHRSVLPNTVQMLGFSRWKEPLANLFFNGAAIRFVKPEQPLAQDLPVVSWGCKHDTHLCAHPLPVNRVEDGFLRSVGLGA
GKARPLSWVVDDLGIYYDATRPSRLERILAEEPFDPQLLARAHALRLAICAAGLTKYNLPGASWQRPSHAQRVILVPGQV
EGDASIRFGGNRIRSNLQLLRAVREQNPDAWVLYKPHPEVLAGTRARGDDEAQTVHWCDEVIGDTPLQQLLEVVDELHVL
TSQSGFEALLRGVPVTTYGQPFYAGWGLTRDMDLQAPVQARRSRQLTLDQLVAGTLLLYPTYVSLVTNRFTTAERTLYEL
QNWHALPQPGAPSRWQDLKRRLSSLLGRKRPTN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 1e-86 45
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 1e-86 45
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 3e-102 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pput_3912 YP_001269220.1 capsule polysaccharide biosynthesis protein VFG0259 Protein 1e-102 41