Gene Information

Name : Pput_3903 (Pput_3903)
Accession : YP_001269211.1
Strain : Pseudomonas putida F1
Genome accession: NC_009512
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 4383905 - 4384558 bp
Length : 654 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
GTGTTCGAACTCAGAAACGTCACCAAGTCATACCTCACGCCCAATGGCCGACGGTATGTTTTCCGCAATCTTTCGCTGGC
AATTCCGCCTGGCAAGAATATCGGACTGATCGGCCGTAACGGCGCAGGCAAGTCCACCCTTATGCGCCTGCTGGGCGGAG
CTGACGTTCCCGATTCAGGCACCATCGCTACCGACCGCAGCATATCGTGGCCGGTCGGCTTGACTGGCGGTTTCCAAGGC
AGCATGACCGGTCGCGACAACATCAAGTTCGTTTGCCGTGTCTATGGAGCCACAGGCGAAGCGATGCGCGAGAAGATTCG
TTATGTACAAGAGTTCGCAGAAATTGGCGACTGGATTGACGAGCCGATCAAAACCTACTCCTCCGGTATGCGCTCACGGG
TTGCGTTTGGCCTGAGCATGGCATTCGATTTTGATTACTACCTCATCGATGAAGTCATGTCGGTTGGGGACGCACAATTC
AAGCGCAAGTGCGCCGAGGTCTTCCAAGAAAAGCTGCAAAAATCAAACGTTGTGCTGGTCACTCACACAATGTCCGAGGT
CGAAAAACTCTGCGACATAGTCCTTCTGGTGAGAAATGGCAGCATCCAGGTTTACGACGACGTCGCTGAAGGCATCAAAG
CCTACAACAGCTGA

Protein sequence : 
MFELRNVTKSYLTPNGRRYVFRNLSLAIPPGKNIGLIGRNGAGKSTLMRLLGGADVPDSGTIATDRSISWPVGLTGGFQG
SMTGRDNIKFVCRVYGATGEAMREKIRYVQEFAEIGDWIDEPIKTYSSGMRSRVAFGLSMAFDFDYYLIDEVMSVGDAQF
KRKCAEVFQEKLQKSNVVLVTHTMSEVEKLCDIVLLVRNGSIQVYDDVAEGIKAYNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 4e-60 56
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 2e-58 54
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 3e-45 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pput_3903 YP_001269211.1 ABC transporter-like protein VFG1449 Protein 1e-60 56
Pput_3903 YP_001269211.1 ABC transporter-like protein VFG0696 Protein 2e-46 44
Pput_3903 YP_001269211.1 ABC transporter-like protein VFG0258 Protein 9e-46 43