|
Name : Pput_3628 (Pput_3628) Accession : YP_001268936.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Unknown Product : methyl-accepting chemotaxis sensory transducer Function : - COG functional category : N : Cell motility COG ID : COG0840 EC number : - Position : 4054022 - 4055587 bp Length : 1566 bp Strand : + Note : TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein DNA sequence : ATGCGTAACAACCAGCCGATTACCCAGAGAGAACGGACTTTCCCTGCCCAGCAGCGGTTGATCTCCACTACCAACGCCAA GGGTGTGGTCACCTACTGCAACGATGCCTTTATCGAAATCAGTGGATTCACCCGCGAGGAGCTGACTGGCGCACCGCACA ACCTGGTGCGTCACCCCGACGTACCGCCTGCCGTGTTTGCCCATATGTGGCAGACCCTCAAGCAGGGCCAGCCGTGGATG GGCATCGTCAAGAACCGCTGCAAATCCGGCGACCATTACTGGGTCAACGCCTATGTCACACCCATCTTCGATAACAACCA GGTTGTCGGCTTCGAGTCGGTGCGGGTCAAGCCCACTGCCGAGCAGATCCGCCGTGCCGAGGCCCTGTATCAGCGCATCA ACCAGGGCAAGCCACCGGTACCGCGCCGCGACAAGTGGCTGCCAGTGCTGCAGGACTGGCTACCGTTCATCCTGATCAGC CAGGTGGGCTTCCTGATCGGCAACTGGCTGGGTCATTCCTGGGGCTTTGCCTTGGCCGCAGGGCTTTCGGTACCACTGGG CCTGCTCGGCCTGAGCTGGCAGCAGCGCGGCCTCAAGCGCCTGCTGCGCCTGGCCGAGCAAACCACTTCCGACCCACTGA TCGCGCAGATGTACACCGACAGCCGTGGCGTGCAGGCGCGCCTGGAAATGGCCATGCTCAGCCAGGACGCACGCATGAAA ACCTGCCTGACCCGCCTACAAGACAGTGCCGAACACCTGAGCGACCAGGCACGCCAGTCCGATGCCTTGGCGCACAAGAG CTCTACGGGGCTGGAGCGCCAGCGGGTGGAGACCGAGCAAGTCGCCGCTGCGGTAAACCAGATGGCCGCCACCACTCAGG AAGTGGCCAACCATGTGCAGCGCACCGCCGATGCCACCCAGGAAGCCAACCGCCTGACCAGCCAGGGCCGGCAGATTGCC GGAGAAACCCGCGAGGCCATCGAGCGCCTGTCGGCGGCAGTGGGCGAGACCGGCCAGACGGTTACGCAACTGGCCAAGGA CAGCGACGAGATTGGTGGCGTGGTCGACGTGATCAAGGGCATCGCCGACCAGACCAACCTGCTGGCACTGAACGCAGCCA TTGAAGCAGCGCGCGCCGGTGAAATGGGCCGTGGTTTTGCCGTGGTGGCTGATGAAGTGCGTCAGTTGGCCCAGCGCACC GCCGAATCCACCGGGCAGATCCACGGCCTGATCGCCAAGCTGCAACAGACCGCCAGTAACGCAGTGCTGACCATGGAAAC CGGCCACCGCCAGGCACAGGAAGGCGTCGACCGGGTAATGCAGGCCGATGAGGCGTTGGTAGGCATCAGCGAAGCGGTGG CCAATATCACCGACATGGCCACCCAGATTGCTGCTGCAACCGAGGAGCAGACCGCAGTGGCTGACGAGATCAGCCGCAAC ATCAGCACCATTGCCGAACTGGCCGACCAGACCGCCGAACAGGCGCAGCACTCGGCACTGCTGAGCGAAGAACTGACCAG CACGGCGGGCAGCCAGTATTCGCTGGTGGAGCGCTTCAACCGCTGA Protein sequence : MRNNQPITQRERTFPAQQRLISTTNAKGVVTYCNDAFIEISGFTREELTGAPHNLVRHPDVPPAVFAHMWQTLKQGQPWM GIVKNRCKSGDHYWVNAYVTPIFDNNQVVGFESVRVKPTAEQIRRAEALYQRINQGKPPVPRRDKWLPVLQDWLPFILIS QVGFLIGNWLGHSWGFALAAGLSVPLGLLGLSWQQRGLKRLLRLAEQTTSDPLIAQMYTDSRGVQARLEMAMLSQDARMK TCLTRLQDSAEHLSDQARQSDALAHKSSTGLERQRVETEQVAAAVNQMAATTQEVANHVQRTADATQEANRLTSQGRQIA GETREAIERLSAAVGETGQTVTQLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRT AESTGQIHGLIAKLQQTASNAVLTMETGHRQAQEGVDRVMQADEALVGISEAVANITDMATQIAAATEEQTAVADEISRN ISTIAELADQTAEQAQHSALLSEELTSTAGSQYSLVERFNR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0512 | NP_230163.1 | methyl-accepting chemotaxis protein | Not tested | VSP-2 | Protein | 4e-68 | 41 |
