Gene Information

Name : Pput_3039 (Pput_3039)
Accession : YP_001268351.1
Strain : Pseudomonas putida F1
Genome accession: NC_009512
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3423610 - 3424272 bp
Length : 663 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein

DNA sequence : 
ATGCGGCTGTTGCTGGTTGAGGATGACATTGCACTGGGGGAAGGGATCTGCGATGGCCTGCGCCAGGAGGGGTACACCCT
CGACTGGTTGCGTGACGGTGTCAGTGGCTTGCATGCGCTGCAGCACGAGACCTTCGACCTGCTGATCCTGGACCTTGGAT
TACCCCGTATGGATGGCATTGAGCTACTCAGGCGATTACGCGCCGGCGGCGACAGCTTGCCGGTGCTGATCCTCACCGCG
CGGGATGCCCTCGATGATCGCATTGCCGGCCTGGATGCCGGTGCCGATGACTACCTGGTCAAGCCTTTCGACCTCAACGA
GCTCAAGGCACGCTTGCGTGCCTTGCTGCGGCGCAGCGTCGGGCGCGCCAAGGTACTGATCGAGCATGCCGGGGTCAGCC
TGGACCCGACCACCCAGCAAGTGCATTACAACGGCGTCGACGTTGTGCTCACCCCCAAGGAGTACGTGCTGTTGCATGAG
TTGCTGGCACATCCCGGCAAGGTATTCACGCGTGAGCGCCTCACTCAACTGCTGTATGGCTGGGATGAAGAGCCGGAGAG
CAACACGCTGGAGGTGAACATCTACCATCTGCGCAAGAAGCTGTTCAACGGCCTGATTCGCACGGTGCGCGGCATTGGCT
ATCTGGTCGAGGTCAAGGCATGA

Protein sequence : 
MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLLILDLGLPRMDGIELLRRLRAGGDSLPVLILTA
RDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSVGRAKVLIEHAGVSLDPTTQQVHYNGVDVVLTPKEYVLLHE
LLAHPGKVFTRERLTQLLYGWDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGYLVEVKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-32 46
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-26 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pput_3039 YP_001268351.1 two component transcriptional regulator BAC0487 Protein 1e-32 49
Pput_3039 YP_001268351.1 two component transcriptional regulator NC_002516.2.879194.p Protein 2e-27 45
Pput_3039 YP_001268351.1 two component transcriptional regulator BAC0197 Protein 1e-30 43
Pput_3039 YP_001268351.1 two component transcriptional regulator BAC0308 Protein 1e-27 41
Pput_3039 YP_001268351.1 two component transcriptional regulator Y16952.3.orf35.gene. Protein 4e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pput_3039 YP_001268351.1 two component transcriptional regulator VFG0473 Protein 1e-36 48
Pput_3039 YP_001268351.1 two component transcriptional regulator VFG0596 Protein 3e-27 43
Pput_3039 YP_001268351.1 two component transcriptional regulator VFG1390 Protein 2e-31 42