Gene Information

Name : Pput_2948 (Pput_2948)
Accession : YP_001268260.1
Strain : Pseudomonas putida F1
Genome accession: NC_009512
Putative virulence/resistance : Unknown
Product : Type IV secretory pathway VirB4 components-like protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG3451
EC number : -
Position : 3328392 - 3331133 bp
Length : 2742 bp
Strand : +
Note : -

DNA sequence :
ATGGCTGATGACGCGAGTCGCGATCCGTCCCGCTGGAAGCCCTGGCGCGCGGCACAGCGCCGGCGCGCCACCCTGGCCGA
CGAAACCGCCCAGTACGCGCACAACCCCAGCTTCACCGACCACCTGCCCTGGGTCGAGTATCTGGAAGAGGGACAGTGCT
TTCTGCTTGATGACAACCGTTCTGTGGGTGCCGTATTCGAGCTGCAACCGATCGGCACGGAGGGTCGCGAGCCCGAATGG
TTGATGGCCGCACGCGACGCCCTGGAAGATGCGCTGCAGGACAGCTTCGACGAGCTCGATCAGGCGCCCTGGGTGGTGCA
GTTCTTCTGCCAGGACGACAGTGATTTTGCCCCGTACCTTGAACGCCTGGAGCGCTACATCGCGCCGCGCGCGCGAGGTA
GGCCGTTCACCGAGGCCTTCCTCGCCTCGATGCGCCGCCATCTTGAAGCCGTCGGCAAACCGGGTGGGCTGTTCGACGAC
CATGTGGTGTCTCACCTTCCGTGGCGCGGTAGCAATCGGCGTATTCGCCTGGTGGTCTACCGCTGGCTCGGGGAGCAGGC
TGACGAGGATGGGCAGAGCCCGGTCCAGCTGTTGAACCGCACCTGCGACCGCTTGGTGGCCTCGCTGCAGGCCTGCGGGG
TCAGCCCTCGGCGGCTGACCGGGCGCGACTTTTACGCCTGGTTGTTGCCTTGGTTCAACCCGGCACCAGCCCTCACTGGC
GAATCCCCCGCCGCGTTCTATCGACGTGTGCCCTACCCGGAAGTGGATGACGGTGAGGAGCTGCCGCTGCCGTTCGACCA
CGATTTCGCCGAGCGGCTGTTCTTTCAGGAACCACGCTCAAATAGCGAGCAAGGTCTGTGGTACTTCGATCAGCAACCGC
ACGCCGTGATGGTGGTCGACAAGCTGCGCAGGCCGCCGCATATCGGCCAGCTGACCGGTGAAACGCGCAAAGGCGAAGCG
TTGAACGCCTTGTTCGATCAGTTGCCCGAGCAGTCGGTCATGAGCCTGACCTTGGTGATCACGCCCCAGGATGTGCTCGA
GGAGCAGCTCAATCGCCTGGCGCGCAAAGCCATCGGCGAGAACCTCGCCTCGACCCAGACCCGCCAGGACGTGGAGGAGG
CCCGCGCGCTGATTGGCCGCCAACACAAACTGTACCGCGGCACGTTGGCGCTGTACCTGCGCGGTGCCGATGAGCAGCAG
CTGCGCCAACGTTCGGTCCAGGCAGCTAACGTCCTGCTCGGCGCCGGCCTGCAGCCGGTGCGCGAGGGCGATGAAGTGGC
CGCGTGCAACAGCTATCTGCGCTGGTTGCCGATGGTCTACAACCCGGCGCGGGACACACGCAACTGGTACACCCGGCTGC
TGTTTGCTCAGCACGTCGCCAATCTGCTGCCCCTCTGGGGGCGCAGCATCGGTACCGGCAACCCGGGTATTACCTTCTTC
AACCGCGGTGGTGCGCCGCTGTCATTCGACCCGCTGTCGCGCTTCGACCGCTCCATGAACGGCCACCTGCTGCTATTTGG
CCCTACCGGCGCCGGCAAGTCGGCCACCCTGGTTTCAATCCTGATGCAGGTCATGGCCGTGTACCGACCGCGGCTGTTCA
TCGTCGAAGCGGGCAACTCCTTTGGCCTGCAGGGCGACTACTTCGCCACGCTCGGGCTAACCGTCAACAAGGTTCAGCTC
AAACCAGGCAGCGATGTGAGCCTGGCGCCGTTCGCCCATGCCCGGCGCCTGATAGAGCATCCGGACCAGGTCGCCAGTCT
GTCAACCGAAGAACTGGATGAGGCCGCGCCGGACAGTGGCGAGCAGCGCGATGTACTGGGCGAGCTGGAGATCACCGCGC
GGCTGATGATCACCGGCGGCGAAGCCAAGGAAGAGGCGCGCCTGACTCGCGCAGACCGCAGTCTGATCCGCGAGTGCATC
CTCGACGCCGCCCGGCACTGCGCGACGACTGAGCAGCAGGTGCTGACCCGCCATGTCCGCGATGCCCTGCGTAAGGTCGC
CAGCGACACCCACCTGCCTGACAAACGCCGCGAGCGTGCGCAGGAGATGGCCGAGTCGATCGACCTGTTCTGCCAGGGCT
TTGAAGGTGCCTTGTTCGACCGCGCCGGCACACCCTGGCCGGAGAGCGACGTGACGATCGTCGACCTCGCCACGTACGCC
CGTGAGGGTTACGAGGCGCAGATGTCGATCAGCTACATCAGCCTGATGAACACCGTGAACAACATTGCCGAGCGCGACCA
GTACCTCGGCCGCCCGATCATCATGGTCACCGACGAAGGCCACATCATCACCAAGAACCCGCTGCTGGCCCCCTTTGTGG
TCAAGGGCACGAAGATGTGGCGCAAGCTCGGCGCCTGGTTCTGGCTGGCAACGCAGAACATGGCCGACTTGCCCGATGCC
GCGCAGACCATGCTCAACATGATTGAGTGGTGGATCTGCTTGAACATGCCGCCAGCGGAAATCGAGGAGATCGCCCGCTT
CAAGAAACTCACGCCGGCGCAGAAGGTACTGCTGCTCTCCGCGAGCAAGGCCTCGGGCAAGTACACCGAGGGCGTGGTCC
TGTCGAAGAACCTGGAGACGCTGTTCCGCGCAGTGCCGCCGAGCCTGTACCTCGCTTTGGCCATGACCGAGCCCGAGGAG
AAAGCCCAGCGCTGGCGATTGATGGAAGAGCACCAGCAGCCTGAGCTGGAAGCCGCCCTGCAGGTCGCGGCGGAGATTGA
TCGCCTGCGTGGCATGTCATAA

Protein sequence :
MADDASRDPSRWKPWRAAQRRRATLADETAQYAHNPSFTDHLPWVEYLEEGQCFLLDDNRSVGAVFELQPIGTEGREPEW
LMAARDALEDALQDSFDELDQAPWVVQFFCQDDSDFAPYLERLERYIAPRARGRPFTEAFLASMRRHLEAVGKPGGLFDD
HVVSHLPWRGSNRRIRLVVYRWLGEQADEDGQSPVQLLNRTCDRLVASLQACGVSPRRLTGRDFYAWLLPWFNPAPALTG
ESPAAFYRRVPYPEVDDGEELPLPFDHDFAERLFFQEPRSNSEQGLWYFDQQPHAVMVVDKLRRPPHIGQLTGETRKGEA
LNALFDQLPEQSVMSLTLVITPQDVLEEQLNRLARKAIGENLASTQTRQDVEEARALIGRQHKLYRGTLALYLRGADEQQ
LRQRSVQAANVLLGAGLQPVREGDEVAACNSYLRWLPMVYNPARDTRNWYTRLLFAQHVANLLPLWGRSIGTGNPGITFF
NRGGAPLSFDPLSRFDRSMNGHLLLFGPTGAGKSATLVSILMQVMAVYRPRLFIVEAGNSFGLQGDYFATLGLTVNKVQL
KPGSDVSLAPFAHARRLIEHPDQVASLSTEELDEAAPDSGEQRDVLGELEITARLMITGGEAKEEARLTRADRSLIRECI
LDAARHCATTEQQVLTRHVRDALRKVASDTHLPDKRRERAQEMAESIDLFCQGFEGALFDRAGTPWPESDVTIVDLATYA
REGYEAQMSISYISLMNTVNNIAERDQYLGRPIIMVTDEGHIITKNPLLAPFVVKGTKMWRKLGAWFWLATQNMADLPDA
AQTMLNMIEWWICLNMPPAEIEEIARFKKLTPAQKVLLLSASKASGKYTEGVVLSKNLETLFRAVPPSLYLALAMTEPEE
KAQRWRLMEEHQQPELEAALQVAAEIDRLRGMS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG57 AAN62279.1 hypothetical protein Not tested PAGI-3(SG) Protein 0.0 65
ORF C47 AAN62141.1 hypothetical protein Not tested PAGI-2(C) Protein 0.0 64
virB4 CAI36125.1 VirB4 component Not tested PPHGI-1 Protein 0.0 61
unnamed ABR13362.1 hypothetical protein Not tested PAGI-5 Protein 0.0 55
YpsIP31758_3705 YP_001402659.1 hypothetical protein Not tested YAPI Protein 0.0 55
api39 CAF28513.1 hypothetical protein Not tested YAPI Protein 0.0 55
RL022 AAP84149.1 conserved hypothetical protein Not tested PAPI-1 Protein 0.0 55
EXA33 ABD94642.1 conserved hypothetical protein Not tested ExoU island A Protein 0.0 55
YE3482 YP_001007641.1 hypothetical protein Not tested YAPI Protein 0.0 54
PMI2576 YP_002152295.1 hypothetical protein Not tested Not named Protein 0.0 54
STY4573 NP_458658.1 hypothetical protein Not tested SPI-7 Protein 0.0 53
Pmu_03070 YP_005176206.1 conjugative transfer ATPase TraC-like, PFL family Not tested ICEPmu1 Protein 0.0 51