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Name : Pput_2948 (Pput_2948) Accession : YP_001268260.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Unknown Product : Type IV secretory pathway VirB4 components-like protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3451 EC number : - Position : 3328392 - 3331133 bp Length : 2742 bp Strand : + Note : - DNA sequence : ATGGCTGATGACGCGAGTCGCGATCCGTCCCGCTGGAAGCCCTGGCGCGCGGCACAGCGCCGGCGCGCCACCCTGGCCGA CGAAACCGCCCAGTACGCGCACAACCCCAGCTTCACCGACCACCTGCCCTGGGTCGAGTATCTGGAAGAGGGACAGTGCT TTCTGCTTGATGACAACCGTTCTGTGGGTGCCGTATTCGAGCTGCAACCGATCGGCACGGAGGGTCGCGAGCCCGAATGG TTGATGGCCGCACGCGACGCCCTGGAAGATGCGCTGCAGGACAGCTTCGACGAGCTCGATCAGGCGCCCTGGGTGGTGCA GTTCTTCTGCCAGGACGACAGTGATTTTGCCCCGTACCTTGAACGCCTGGAGCGCTACATCGCGCCGCGCGCGCGAGGTA GGCCGTTCACCGAGGCCTTCCTCGCCTCGATGCGCCGCCATCTTGAAGCCGTCGGCAAACCGGGTGGGCTGTTCGACGAC CATGTGGTGTCTCACCTTCCGTGGCGCGGTAGCAATCGGCGTATTCGCCTGGTGGTCTACCGCTGGCTCGGGGAGCAGGC TGACGAGGATGGGCAGAGCCCGGTCCAGCTGTTGAACCGCACCTGCGACCGCTTGGTGGCCTCGCTGCAGGCCTGCGGGG TCAGCCCTCGGCGGCTGACCGGGCGCGACTTTTACGCCTGGTTGTTGCCTTGGTTCAACCCGGCACCAGCCCTCACTGGC GAATCCCCCGCCGCGTTCTATCGACGTGTGCCCTACCCGGAAGTGGATGACGGTGAGGAGCTGCCGCTGCCGTTCGACCA CGATTTCGCCGAGCGGCTGTTCTTTCAGGAACCACGCTCAAATAGCGAGCAAGGTCTGTGGTACTTCGATCAGCAACCGC ACGCCGTGATGGTGGTCGACAAGCTGCGCAGGCCGCCGCATATCGGCCAGCTGACCGGTGAAACGCGCAAAGGCGAAGCG TTGAACGCCTTGTTCGATCAGTTGCCCGAGCAGTCGGTCATGAGCCTGACCTTGGTGATCACGCCCCAGGATGTGCTCGA GGAGCAGCTCAATCGCCTGGCGCGCAAAGCCATCGGCGAGAACCTCGCCTCGACCCAGACCCGCCAGGACGTGGAGGAGG CCCGCGCGCTGATTGGCCGCCAACACAAACTGTACCGCGGCACGTTGGCGCTGTACCTGCGCGGTGCCGATGAGCAGCAG CTGCGCCAACGTTCGGTCCAGGCAGCTAACGTCCTGCTCGGCGCCGGCCTGCAGCCGGTGCGCGAGGGCGATGAAGTGGC CGCGTGCAACAGCTATCTGCGCTGGTTGCCGATGGTCTACAACCCGGCGCGGGACACACGCAACTGGTACACCCGGCTGC TGTTTGCTCAGCACGTCGCCAATCTGCTGCCCCTCTGGGGGCGCAGCATCGGTACCGGCAACCCGGGTATTACCTTCTTC AACCGCGGTGGTGCGCCGCTGTCATTCGACCCGCTGTCGCGCTTCGACCGCTCCATGAACGGCCACCTGCTGCTATTTGG CCCTACCGGCGCCGGCAAGTCGGCCACCCTGGTTTCAATCCTGATGCAGGTCATGGCCGTGTACCGACCGCGGCTGTTCA TCGTCGAAGCGGGCAACTCCTTTGGCCTGCAGGGCGACTACTTCGCCACGCTCGGGCTAACCGTCAACAAGGTTCAGCTC AAACCAGGCAGCGATGTGAGCCTGGCGCCGTTCGCCCATGCCCGGCGCCTGATAGAGCATCCGGACCAGGTCGCCAGTCT GTCAACCGAAGAACTGGATGAGGCCGCGCCGGACAGTGGCGAGCAGCGCGATGTACTGGGCGAGCTGGAGATCACCGCGC GGCTGATGATCACCGGCGGCGAAGCCAAGGAAGAGGCGCGCCTGACTCGCGCAGACCGCAGTCTGATCCGCGAGTGCATC CTCGACGCCGCCCGGCACTGCGCGACGACTGAGCAGCAGGTGCTGACCCGCCATGTCCGCGATGCCCTGCGTAAGGTCGC CAGCGACACCCACCTGCCTGACAAACGCCGCGAGCGTGCGCAGGAGATGGCCGAGTCGATCGACCTGTTCTGCCAGGGCT TTGAAGGTGCCTTGTTCGACCGCGCCGGCACACCCTGGCCGGAGAGCGACGTGACGATCGTCGACCTCGCCACGTACGCC CGTGAGGGTTACGAGGCGCAGATGTCGATCAGCTACATCAGCCTGATGAACACCGTGAACAACATTGCCGAGCGCGACCA GTACCTCGGCCGCCCGATCATCATGGTCACCGACGAAGGCCACATCATCACCAAGAACCCGCTGCTGGCCCCCTTTGTGG TCAAGGGCACGAAGATGTGGCGCAAGCTCGGCGCCTGGTTCTGGCTGGCAACGCAGAACATGGCCGACTTGCCCGATGCC GCGCAGACCATGCTCAACATGATTGAGTGGTGGATCTGCTTGAACATGCCGCCAGCGGAAATCGAGGAGATCGCCCGCTT CAAGAAACTCACGCCGGCGCAGAAGGTACTGCTGCTCTCCGCGAGCAAGGCCTCGGGCAAGTACACCGAGGGCGTGGTCC TGTCGAAGAACCTGGAGACGCTGTTCCGCGCAGTGCCGCCGAGCCTGTACCTCGCTTTGGCCATGACCGAGCCCGAGGAG AAAGCCCAGCGCTGGCGATTGATGGAAGAGCACCAGCAGCCTGAGCTGGAAGCCGCCCTGCAGGTCGCGGCGGAGATTGA TCGCCTGCGTGGCATGTCATAA Protein sequence : MADDASRDPSRWKPWRAAQRRRATLADETAQYAHNPSFTDHLPWVEYLEEGQCFLLDDNRSVGAVFELQPIGTEGREPEW LMAARDALEDALQDSFDELDQAPWVVQFFCQDDSDFAPYLERLERYIAPRARGRPFTEAFLASMRRHLEAVGKPGGLFDD HVVSHLPWRGSNRRIRLVVYRWLGEQADEDGQSPVQLLNRTCDRLVASLQACGVSPRRLTGRDFYAWLLPWFNPAPALTG ESPAAFYRRVPYPEVDDGEELPLPFDHDFAERLFFQEPRSNSEQGLWYFDQQPHAVMVVDKLRRPPHIGQLTGETRKGEA LNALFDQLPEQSVMSLTLVITPQDVLEEQLNRLARKAIGENLASTQTRQDVEEARALIGRQHKLYRGTLALYLRGADEQQ LRQRSVQAANVLLGAGLQPVREGDEVAACNSYLRWLPMVYNPARDTRNWYTRLLFAQHVANLLPLWGRSIGTGNPGITFF NRGGAPLSFDPLSRFDRSMNGHLLLFGPTGAGKSATLVSILMQVMAVYRPRLFIVEAGNSFGLQGDYFATLGLTVNKVQL KPGSDVSLAPFAHARRLIEHPDQVASLSTEELDEAAPDSGEQRDVLGELEITARLMITGGEAKEEARLTRADRSLIRECI LDAARHCATTEQQVLTRHVRDALRKVASDTHLPDKRRERAQEMAESIDLFCQGFEGALFDRAGTPWPESDVTIVDLATYA REGYEAQMSISYISLMNTVNNIAERDQYLGRPIIMVTDEGHIITKNPLLAPFVVKGTKMWRKLGAWFWLATQNMADLPDA AQTMLNMIEWWICLNMPPAEIEEIARFKKLTPAQKVLLLSASKASGKYTEGVVLSKNLETLFRAVPPSLYLALAMTEPEE KAQRWRLMEEHQQPELEAALQVAAEIDRLRGMS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF SG57 | AAN62279.1 | hypothetical protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 65 |
| ORF C47 | AAN62141.1 | hypothetical protein | Not tested | PAGI-2(C) | Protein | 0.0 | 64 |
| virB4 | CAI36125.1 | VirB4 component | Not tested | PPHGI-1 | Protein | 0.0 | 61 |
| unnamed | ABR13362.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 0.0 | 55 |
| YpsIP31758_3705 | YP_001402659.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 55 |
| api39 | CAF28513.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 55 |
| RL022 | AAP84149.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 0.0 | 55 |
| EXA33 | ABD94642.1 | conserved hypothetical protein | Not tested | ExoU island A | Protein | 0.0 | 55 |
| YE3482 | YP_001007641.1 | hypothetical protein | Not tested | YAPI | Protein | 0.0 | 54 |
| PMI2576 | YP_002152295.1 | hypothetical protein | Not tested | Not named | Protein | 0.0 | 54 |
| STY4573 | NP_458658.1 | hypothetical protein | Not tested | SPI-7 | Protein | 0.0 | 53 |
| Pmu_03070 | YP_005176206.1 | conjugative transfer ATPase TraC-like, PFL family | Not tested | ICEPmu1 | Protein | 0.0 | 51 |
