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Name : Pput_2923 (Pput_2923) Accession : YP_001268236.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 3309666 - 3311630 bp Length : 1965 bp Strand : + Note : TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub do DNA sequence : ATGCGCCTGTTCATCTGCGAGAAACCATCCCAAGCCCGCGATATCGCCCGGGTGCTGCAGGCCAGCCACCGCGCTGATGG CTGTCTGAAGGGGCAGAACGTCACCATCACCTGGTGCGTCGGCCATCTGCTGGAGACCGCTCCGCCTGAAACCTATGGCG ACTACAAGCGCTGGTCGCTGGACGATCTGCCGATCATTCCCAGTCAATGGAAATTGGTGGCCAAGCCCAAGGTCGCTGGC CAGCTCAAGGTGATCAGTCAACTGCTGCGCACCTGCAGCGAGGTGGTCATCGCTACCGATGCCGACCGCGAAGGCGAGAT GATCGCCAGGGAGATTCTCGAGCGCTGCCAGTATCAGGGGCCTATTTTGCGCCTGTGGCTCTCCGCGCTGGACGAGGCGT CGATCCGCCGAGCCCTGGGCGCCTTGCGTCCAGGGGAGGAAACCTTGCCGCTGTATCACTGTGCGCTGGCCCGCTCCCGT GCCGACTGGCTGGTCGGCATCAACCTGAGCCGGCTGTTCACGCTGCTCGGCCGCCGCTCCGGTTTCGATGGACTGCTGCC GGTGGGACGCGTACAGACGCCCACCCTGCGCTTGGTGGTCGAGCGCGACCGGGCGATCGCCAGCTTTGTGCCGCTACCGT TCTGGACCGTCGATGTGCACCTGGAGCAGGACGGGATCCGCTTTCAAGCGCGCTGGCAGGCCCCGACCGCGGTCAGCGAT GCGGTTGGACGCTGTATTGACGAAACCGCCGCACAGCAGGCGCAGAGACGCTTCATTCAAGCCGGCACCGCCGAGATCGA TAATGCCGAAGTCGAGCACGTGCGCGAAGGCCCGCCGCTACCGTTCGACCTGGGCACGTTGCAGGAAATCTGCTCGGCCA AGCTCGGATTGGGTGCACAGGAAACCTTGGCCACCGCCCAGGCCCTGTATGAAACCCACAAGGCGACGACGTACCCGCGG ACCGATTGCGGCTATTTGCCGGAGAGTATGCTCGATGAGGTGCCTCGCGTGCTTCACGCCCTGGCCGCTGCACCATCGCT GGGGGCAGTGCTCAAGGAAGTCGACCCCAGCCGCCGCTCCCGTGCCTGGAACAGCAGCAAGATCACCGCGCACCACGGCA TCATCCCCACCGCCGTCACGCTGGATCTGGCGCAGCTCTCCGAACGCGAGCGGGCGGTTTACACGCTGATCCGCGCACGC TACCTCGCGCAGTTCATGCCCGAGCACGAATACCTCAAAACCCAGGCGCTGCTGCACAGCCAGGCAGATCAACTGGTGGC GCGCGGCAAACAGATCCTGGTCCGCGGCTGGAAGGCAGTGATCAACGAGGCCGACGGTAACGAGCCGGCCGAACAGGCGC AGCGACTACCCACGTTGCGTGAATCCGCGACGGTGGCGCTGATCGACGCCACGCTCAATGCACAGCGCACACAACCGCCC AAGGCCTACACCGAAGGCACGCTGGTCAAAGCCATGAAAACCATCGCCAACCAGGTGGCCGATCCGCGGCTGAAGCAGAA GCTCAAGGACAGTTGCGGGCTCGGTACCGAGGCCACCCGCGCGGCCATCATCCAGGGCCTGATCGATCACGGTTACCTGA CCAAGAAGAAACGCAGCCTGGCTGCCTCAGCGGCGGCGCATACCTTGATCGAAGCGGTGCCACCAGAGGTGGCCGACCCG GTCATGACTGCGCTGTGGGAGCAGGCGCTGGATCGCATCGAATCGGGCCAGCTGAGTGTCGATACCTTTCTCGCCAAGCA GGCAGAGTGGCTGACCCGCTTGGTGCGCAGTAACGCCACGCTCACCCTGCGCCCGCCCCCCAGCAAGGGGCCCTTCTGCC CGGTGTGCCGCAGCACCATGCGCCAGCGTAAAGGTCGCACCGGCAGCTTCTGGTCGTGCATCCGCTACCCCGAGTGCAAG GGCACCAAACCGGTGGCGAAAGCCAAGCGGGCGAAAAACGCATGA Protein sequence : MRLFICEKPSQARDIARVLQASHRADGCLKGQNVTITWCVGHLLETAPPETYGDYKRWSLDDLPIIPSQWKLVAKPKVAG QLKVISQLLRTCSEVVIATDADREGEMIAREILERCQYQGPILRLWLSALDEASIRRALGALRPGEETLPLYHCALARSR ADWLVGINLSRLFTLLGRRSGFDGLLPVGRVQTPTLRLVVERDRAIASFVPLPFWTVDVHLEQDGIRFQARWQAPTAVSD AVGRCIDETAAQQAQRRFIQAGTAEIDNAEVEHVREGPPLPFDLGTLQEICSAKLGLGAQETLATAQALYETHKATTYPR TDCGYLPESMLDEVPRVLHALAAAPSLGAVLKEVDPSRRSRAWNSSKITAHHGIIPTAVTLDLAQLSERERAVYTLIRAR YLAQFMPEHEYLKTQALLHSQADQLVARGKQILVRGWKAVINEADGNEPAEQAQRLPTLRESATVALIDATLNAQRTQPP KAYTEGTLVKAMKTIANQVADPRLKQKLKDSCGLGTEATRAAIIQGLIDHGYLTKKKRSLAASAAAHTLIEAVPPEVADP VMTALWEQALDRIESGQLSVDTFLAKQAEWLTRLVRSNATLTLRPPPSKGPFCPVCRSTMRQRKGRTGSFWSCIRYPECK GTKPVAKAKRAKNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 58 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 58 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 57 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 6e-156 | 48 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 8e-154 | 47 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-153 | 47 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 1e-153 | 47 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 2e-144 | 47 |
