|
Name : ssuB (Pput_0255) Accession : YP_001265613.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Resistance Product : aliphatic sulfonates transport ATP-binding subunit Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG1116 EC number : - Position : 297886 - 298698 bp Length : 813 bp Strand : + Note : part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease DNA sequence : ATGACCGTGCTCAAGGAACAGCCACCACGCCTGCTGCGTGGCACCCCGCTGGCCTCCAAGGGCCTGCGCAAGACTTTTGG TCAACGCGAAGTTCTGAAGGGTATCGACCTGCACATTCCGGCCGGCCAGTTCGTGGCCATCGTCGGCCGCAGCGGCTGCG GCAAGAGCACTTTGCTGCGGCTACTGGCCGGGTTGGACCAGCCCACTGCCGGGCAGCTACTGGCGGGTGCCGCGCCGCTG GAAGAGGCCCGTGAAGAAACCCGCCTGATGTTCCAGGACGCGCGGCTGCTGCCGTGGAAGAAGGTGATCGACAACGTTGG CCTTGGGCTGTCTGGCGACTGGCGCCCGCGTGCGCTGGAGGCCTTGGATGCGGTTGGCCTGGCCGACCGCGCCAACGAAT GGCCGGCAGCGCTCTCGGGAGGCCAGAAGCAGCGCGTGGCTTTGGCCCGAGCCTTGATTCACCAGCCCCGCCTGCTGCTG CTGGACGAGCCACTGGGGGCGCTGGATGCATTGACCCGTATCGAGATGCAGCAACTGATCGAACGCCTGTGGCGTCAGCA CGGCTTCACTGTGCTGCTGGTCACCCACGACGTCAGCGAGGCGGTTGCCGTGGCTGACCGGGTGATCCTGATTGAGGACG GCGAGGTCGGGCTCGACCTCACTGTTGACCTGGCACGGCCCCGGGCGCGTGGTTCGCACCGTCTGGCCGCGCTGGAAAGC GAAGTGCTCAACCGTGTTCTGTCCACCCCGGGCACTGCGCCCGAGCCGGATCCTGTAGCCCCTCTGCCCACGCAACTGCG CTGGGCGCACTGA Protein sequence : MTVLKEQPPRLLRGTPLASKGLRKTFGQREVLKGIDLHIPAGQFVAIVGRSGCGKSTLLRLLAGLDQPTAGQLLAGAAPL EEAREETRLMFQDARLLPWKKVIDNVGLGLSGDWRPRALEALDAVGLADRANEWPAALSGGQKQRVALARALIHQPRLLL LDEPLGALDALTRIEMQQLIERLWRQHGFTVLLVTHDVSEAVAVADRVILIEDGEVGLDLTVDLARPRARGSHRLAALES EVLNRVLSTPGTAPEPDPVAPLPTQLRWAH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABA47263.1 | ABC transporter | Not tested | S-PAI | Protein | 8e-37 | 47 |
| Cp1002_1464 | YP_005681730.1 | ABC transporter ATP-binding protein | Not tested | PiCp 5 | Protein | 2e-21 | 44 |
| CpI19_1473 | YP_005685914.1 | ABC transporter ATP-binding protein | Not tested | PiCp 5 | Protein | 3e-23 | 43 |
| CpC231_1466 | YP_005683828.1 | ABC transporter ATP-binding protein | Not tested | PiCp 5 | Protein | 3e-23 | 43 |
| cpfrc_01473 | YP_003783873.1 | hypothetical protein | Not tested | PiCp 5 | Protein | 3e-23 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ssuB | YP_001265613.1 | aliphatic sulfonates transport ATP-binding subunit | NC_012469.1.7686878. | Protein | 3e-21 | 41 |
