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Name : gabD (Pput_0228) Accession : YP_001265586.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase I Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : - Position : 266409 - 267851 bp Length : 1443 bp Strand : + Note : catalyzes the formation of succinate from succinate semialdehyde; NADP dependent DNA sequence : ATGCAGCTCAAAGACGCTCAGTTGTTCCGCCAGCAAGCCTATATCAATGGTGAGTGGCTGGATGCGGACAACGGCCAGAC CATCAAGGTGACCAACCCGGCCACCGGCGAAGTCATCGGTACCGTGCCGAAGATGGGCACCGCGGAAACTCGCCGTGCTA TCGAAGCCGCCGACAAGGCCCTGCCGGCCTGGCGTGCCCTGACTGCGAAAGAGCGCTCGGCCAAGCTGCGTCGCTGGTTC GAACTGATGATCGAGAACCAGGACGACCTGGCTCGCTTGATGACCACCGAACAGGGCAAGCCACTGGCCGAAGCCAAGGG CGAAATCGCCTACGCGGCCTCGTTCATCGAGTGGTTCGCCGAAGAAGCCAAGCGCATCTACGGTGACACCATCCCAGGCC ACCAGCCAGACAAGCGCCTGATTGTCATCAAGCAGCCAATCGGCGTTACCGCGGCCATCACCCCGTGGAACTTCCCGGCC GCCATGATCACCCGTAAAGCCGGCCCGGCCCTGGCCGCTGGCTGCACCATGGTCCTCAAGCCGGCTTCGCAAACCCCATA CTCCGCTCTGGCCCTGGTCGAGCTGGCCCACCGTGCCGGCATCCCGGCTGGCGTGCTGAGTGTGGTGACCGGCAGCGCCG GCGAAGTTGGCGGCGAACTGACCGGCAACTCCCTGGTACGCAAGCTGTCCTTCACCGGCTCGACCGAAATCGGTCGCCAG CTGATGGAAGAATGCGCCAAGGACATCAAGAAGGTTTCCCTGGAGCTGGGTGGCAACGCCCCGTTCATCGTGTTCGACGA CGCCGACCTGGACAAGGCGGTCGAGGGCGCGATCATCTCCAAGTACCGTAACAACGGCCAGACCTGCGTCTGCGCCAACC GTATCTACGTGCAGGACGGCGTCTACGACGCGTTCGCCCAGAAGCTGGCCGCTGCAGTTGCCAAGCTGAAGATCGGTAAC GGCCTGGAAGAAGGCACCACCACTGGCCCGCTGATCGACGGCAAGGCTGTCGCCAAGGTCCAGGAGCACATCGAGGACGC CGTCAGCAAAGGCGCCAAAGTGCTGTCCGGTGGCAAGCTGATCGAAGGCAACTTCTTCGAGCCGACCATCCTGGTTGACG TACCGAAGACCGCTGCTGTCGCCAAGGAAGAGACGTTCGGCCCACTGGCGCCGCTGTTCCGCTTCAAAGACGAAGCCGAA GTCATCGCCATGTCCAACGACACCGAGTTCGGCTTGGCCTCGTACTTCTACGCCCGTGACATGAGCCGTGTGTTCCGTGT CGCCGAAGCCCTGGAGTACGGCATGGTGGGTATCAACACCGGCCTTATCTCCAACGAAGTGGCGCCGTTCGGTGGTATCA AGGCTTCGGGCCTGGGCCGCGAAGGTTCCAAGTACGGTATCGAGGACTACCTCGAAATCAAATACCTGTGCATCAGCGTC TGA Protein sequence : MQLKDAQLFRQQAYINGEWLDADNGQTIKVTNPATGEVIGTVPKMGTAETRRAIEAADKALPAWRALTAKERSAKLRRWF ELMIENQDDLARLMTTEQGKPLAEAKGEIAYAASFIEWFAEEAKRIYGDTIPGHQPDKRLIVIKQPIGVTAAITPWNFPA AMITRKAGPALAAGCTMVLKPASQTPYSALALVELAHRAGIPAGVLSVVTGSAGEVGGELTGNSLVRKLSFTGSTEIGRQ LMEECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAIISKYRNNGQTCVCANRIYVQDGVYDAFAQKLAAAVAKLKIGN GLEEGTTTGPLIDGKAVAKVQEHIEDAVSKGAKVLSGGKLIEGNFFEPTILVDVPKTAAVAKEETFGPLAPLFRFKDEAE VIAMSNDTEFGLASYFYARDMSRVFRVAEALEYGMVGINTGLISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYLCISV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 3e-155 | 68 |
| hpaE | AAO17179.1 | HpaE | Not tested | tcd island | Protein | 7e-69 | 41 |
| cur_1509 | YP_001800903.1 | NAD-dependent aldehyde dehydrogenase | Not tested | Not named | Protein | 3e-86 | 41 |
