Gene Information

Name : Pput_2084 (Pput_2084)
Accession : YP_001267408.1
Strain : Pseudomonas putida F1
Genome accession: NC_009512
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 2359692 - 2361173 bp
Length : 1482 bp
Strand : -
Note : PFAM: aldehyde dehydrogenase

DNA sequence :
ATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAA
CCCGGCCACCGCCCAGGCCTGGGCGCAACTGCCCGACGCCGATGAAGCCGATGTGGAGCTGGCCGTTCAGGCCGCCCAGC
GTGCCTTCGACAGCAAGGCGTGGCGCAGCATTACCGCCACCGCGCGCGGCAAGCTGTTGCGTCGTCTGGGTGACCTGATT
GCCGAGAACAAGGAGCACCTGGCCCAGCTGGAAAGCCGTGACAACGGCAAGCTGATCCGCGAAACCCGCGGTCAGGTCGG
CTATCTGCCGGAGTTCTTCCACTACACTGCGGGCCTGGCCGACAAGCTCGAAGGCGGCACCCTGCCGTTGGACAAACCCG
ACCTGTTCGCCTACACCGTGCACGAGCCAATCGGCGTGGTTGCCGGGATCATCCCGTGGAACAGCCCGCTGTACCTCACC
GCGATCAAGCTGGCGCCGGCCTTGGCTGCCGGCAACACCATCGTGCTCAAACCGTCCGAGCACGCCTCGGCAACCATCCT
CGAGCTGGCCCGACTGGCCCTTGAGGCCGGCTTCCCGGCCGGTGTGGTCAATGTGGTCACCGGCTACGGCCCCAGCACCG
GCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGTGCCGCCACCGCCCGCCACGTGGTGCGC
AGCAGTGCCGAAAACTTCGCCAAGCTGTCGCTGGAACTGGGTGGCAAGTCGCCGAACATCATCTTCGCCGACGCCGACCT
GGACAGCGCCATCAATGGCGCCGTGGCCGGCATCTACGCCGCGTCCGGGCAAAGCTGCGTGGCCGGTTCGCGCCTGCTGG
TGCAGGATGAAATCTTCGACGTGTTCGTCGAGCGCCTGATTGCCCGCGCCAAGCGCATCCGCATCGGCAACCCGCAGGAC
GACGCCAGCGAAATGGGCCCGATGGCCACCGCGCAACAGCTGGCAGTCGTCGAAGGCCTGGTGGCAGCAGCCAAGGCCGA
AGGCGCAAAACTGCACATGGGCGGAAAGCGTGCCGACGTTGAAGGTGACGGCTGGTTCTACGAGCCGACCCTGTTCGAGT
GCGACAGCAACGCGATGACCATCATGCAGGAAGAAGTGTTCGGCCCGGTCGCCGCGGTGATCCGCTTCAAGACCGAAGAA
GAAGCACTGGCCATAGCCAACGACTCGCAATTCGGCCTGGCTGCCGGCATCTGGACGCGCGATCTGGGCCGTGCCCACCG
CCTGGCCCGCGACGTGCGTTCGGGGATCATCTGGGTCAACACCTACCGTGCCGTGTCGGCCATGGCACCGATAGGTGGTT
TCAAGAACAGCGGCTACGGCCGTGAGAGCGGCATCGATTCGGTGCTGGCCTATACCGAGCTGAAGACCGTGTGGATCAAC
TTGTCCACCGCGCCGATGCCCGACCCGTTCGTGATGCGCTAG

Protein sequence :
MTLVRFQMCIDGQWRDAQSGKTFDSLNPATAQAWAQLPDADEADVELAVQAAQRAFDSKAWRSITATARGKLLRRLGDLI
AENKEHLAQLESRDNGKLIRETRGQVGYLPEFFHYTAGLADKLEGGTLPLDKPDLFAYTVHEPIGVVAGIIPWNSPLYLT
AIKLAPALAAGNTIVLKPSEHASATILELARLALEAGFPAGVVNVVTGYGPSTGAALTRHPLVRKIAFTGGAATARHVVR
SSAENFAKLSLELGGKSPNIIFADADLDSAINGAVAGIYAASGQSCVAGSRLLVQDEIFDVFVERLIARAKRIRIGNPQD
DASEMGPMATAQQLAVVEGLVAAAKAEGAKLHMGGKRADVEGDGWFYEPTLFECDSNAMTIMQEEVFGPVAAVIRFKTEE
EALAIANDSQFGLAAGIWTRDLGRAHRLARDVRSGIIWVNTYRAVSAMAPIGGFKNSGYGRESGIDSVLAYTELKTVWIN
LSTAPMPDPFVMR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf17 AAO17183.1 Orf17 Not tested tcd island Protein 4e-75 42
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 1e-77 42
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 5e-80 41
unnamed AAK01506.1 putative aldehyde dehydrogenase Not tested PAGI-1 Protein 4e-72 41
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 5e-83 41
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 5e-83 41
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 5e-83 41
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 6e-83 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pput_2084 YP_001267408.1 aldehyde dehydrogenase VFG0082 Protein 2e-80 41