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Name : Pput_1725 (Pput_1725) Accession : YP_001267065.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : - Position : 1976191 - 1978440 bp Length : 2250 bp Strand : + Note : PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein DNA sequence : ATGTACAAGGACCTCAAGTTCCCGATCCTCATCGTCCACCGCGCCATCAAGGCCGACAGTGTTGCTGGCGAGCGTGTGCG CGGCATCGCCGAGGAATTGCGCCAGGATGGCTTTGCCATTCTCGCCGCCGCTGACCACGCCGAAGCGCGCCTGGTCGCCG CCACCCACCACGGCCTGGCCTGTATGCTCATCGCGGCCGAAGGCGCTGGCGAGAACACCCATCTGCTGCAGAACATGGCC GAGCTGATTGGCCTGGCCCGCCTGCGTGCACCCAACCTGCCGATCTTCGCCCTGGGCGAGCAGGTGACCCTGGAAAATGC TCCCGCCGAAGCCATGAGCGAGCTCAACCAGCTGCGTGGCATCCTTTACCTGTTCGAAGACACCGTGCCGTTTCTCGCCC GCCAGGTGGCGCGTGCTGCACACACCTACCTCGACGGCCTGCTGCCGCCGTTCTTCAAGGCGCTGGTGCAGCACACCGCG CAGTCCAACTATTCCTGGCACACCCCAGGCCATGGTGGCGGTGTGGCCTATCATAAAAGCCCGGTAGGCCAAGCCTTTCA CCAGTTCTTTGGGGAAAATACCCTGCGCTCGGACCTGTCCGTTTCCGTGCCGGAGCTGGGTTCGCTGCTCGACCACACAG GCCCGCTGGCTGAAGCCGAGGTCAGGGCGGCGCGCAACTTCGGCGCCGACCACACCTTCTTCGTCATCAATGGTACCTCC ACGGCCAACAAGATCGTCTGGCACGCCATGGTCGGCCGTGACGACCTGGTGCTGGTGGACCGCAACTGCCACAAGTCGGT GGTGCACGCGATCATCATGACGGGTGCCATCCCGCTGTACCTGTGCCCGGAGCGCAACGAACTGGGCATCATCGGCCCGA TCCCGCTCAGCGAGTTCAGCCCCGAGGCGATCGCCGCGAAGATTCAGGCCAACCCCCTTGCCCGTGATCGTGGGCAGCGT ATCAAGCTGGCGGTAGTGACCAACTCCACCTACGACGGGCTGTGTTACCACGCCGGGCTGATCAAGCAGGCCCTGGGTGC CAGTGTCGAGGTGCTGCACTTCGACGAGGCCTGGTTTGCCTATGCTGCGTTCCACGACTTTTTCACCGGGCGCTACGCCA TGGGCACCGCCTGCGCGGCAGACAGCCCGCTGGTGTTCAGTACCCATTCCACCCACAAGCTGCTCGCGGCGTTCAGCCAG GCTTCGATGATTCATGTGCAGGACGGGGCCAGGCGGCAGCTGGACCGGGACCGTTTCAACGAAGCGTTCATGATGCACAT CTCTACCTCGCCGCAGTACAGCATTCTCGCCTCGCTGGATGTGGCTTCGGCCATGATGGAAGGGCCGGCCGGGCGCTCGC TGCTGCAGGAGATGTTCGACGAGGCGTTGAGTTTTCGTCGTGCCCTGGCCAACCTGCGTGAGCACATTGCCGCAGAGGAC TGGTGGTTCAGCATCTGGCAGCCGCCAAGTGCCGAGGGCATCCCCCGTCTGGCCGCGCAGGACTGGTTGTTGCAGCCGGG GGCGCAATGGCATGGTTTTGGTGAAGTGGCGGCCGACTATGTGCTGCTCGACCCGCTGAAAGTGACTTTGGTGATGCCGG GCCTGAGCGCTGATGGTGTGCTGGGCGTGCACGGCATCCCGGCGGCAGTCGTCAGCAAGTTTCTCTGGGAGCGCGGGCTG GTGGTGGAAAAAACCGGCCTGTACAGCTTCCTGGTGCTGTTTTCCATGGGCATCACCAAGGGCAAGTGGAGCACCTTGCT CACCGAACTGCTGGAGTTCAAGCGCCACTATGACGGCAACACCCCACTCAGCAGCTGCCTGCCCAGTGTGGGGGCTGCCG ACGCCTTGCGCTACCAGGGCATGGGCCTGCGCGACCTGTGCGACCAGTTACATGACTGCTACCGCGCCAATGCCACGGCC AAGCAGCTGAAGCGGCTGTTCACCCGTTTGCCGGAGGTGGCCGTCAGCCCGGCCCAGGCCTATGACAAGATGGTGCGTGG CGAAGTGGAGGCGGTGCCGATCGAGGCACTACTGGGGCGTGTGGCGGCGGTGATGCTGGTGCCGTACCCGCCTGGCATCC CGTTGATCATGCCAGGTGAGCGGTTCACCGAGGCGACCCGCTCGATCCTGGACTACCTGGCATTCGCCCGAGCATTCAAC CAGGGCTTTCCCGGGTTTGTCGCCGATGTGCACGGCCTGCAGCACGAAGGGGGCCGCTACACGGTGGATTGCATCACGGA ATGCGCGTGA Protein sequence : MYKDLKFPILIVHRAIKADSVAGERVRGIAEELRQDGFAILAAADHAEARLVAATHHGLACMLIAAEGAGENTHLLQNMA ELIGLARLRAPNLPIFALGEQVTLENAPAEAMSELNQLRGILYLFEDTVPFLARQVARAAHTYLDGLLPPFFKALVQHTA QSNYSWHTPGHGGGVAYHKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEVRAARNFGADHTFFVINGTS TANKIVWHAMVGRDDLVLVDRNCHKSVVHAIIMTGAIPLYLCPERNELGIIGPIPLSEFSPEAIAAKIQANPLARDRGQR IKLAVVTNSTYDGLCYHAGLIKQALGASVEVLHFDEAWFAYAAFHDFFTGRYAMGTACAADSPLVFSTHSTHKLLAAFSQ ASMIHVQDGARRQLDRDRFNEAFMMHISTSPQYSILASLDVASAMMEGPAGRSLLQEMFDEALSFRRALANLREHIAAED WWFSIWQPPSAEGIPRLAAQDWLLQPGAQWHGFGEVAADYVLLDPLKVTLVMPGLSADGVLGVHGIPAAVVSKFLWERGL VVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRHYDGNTPLSSCLPSVGAADALRYQGMGLRDLCDQLHDCYRANATA KQLKRLFTRLPEVAVSPAQAYDKMVRGEVEAVPIEALLGRVAAVMLVPYPPGIPLIMPGERFTEATRSILDYLAFARAFN QGFPGFVADVHGLQHEGGRYTVDCITECA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 4e-127 | 42 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 4e-125 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pput_1725 | YP_001267065.1 | lysine decarboxylase | VFG1670 | Protein | 2e-127 | 42 |
