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Name : Pput_1088 (Pput_1088) Accession : YP_001266433.1 Strain : Pseudomonas putida F1 Genome accession: NC_009512 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1226659 - 1228107 bp Length : 1449 bp Strand : + Note : PFAM: type II secretion system protein E DNA sequence : ATGCTGCCCTATCGCCAGGCACGGCAGAGCGGAGTGGCCATGGCCCCGGCAGAGCAGGGCTGGCAGCTATGGCTGCGGCC CGACGCCGACAATGCCCAGTTGCAGGAGTTGCTGCGTGTGCATGGCCAGCCAAGCCTGCTCGAATACCTGGAACCTGCGC TGTTCGACGAGCGCCTTGGCCAGCTGTACCAGGCCGGCGATGCCGCCACCGAAGCGCTGATCGAAGGCATTGGCGACCAG GTCGACCTGGATAGCCTGATGAGCGAGATGCCGCGCATCGAAGACCTGCTTGAAAGCGACGACGAAGCCCCGGTGATTCG CCTGATCAACGGCCTGTTCGGCCAGGCGCTGCGGCTGCGCGCCTCGGACATCCATATCGAGACCTTCGAGCAGAGCCTGG TGGTGCGTTTGCGGGTCGATGGCCACCTGCGTGAGGTGCTGCGCCCTCCACGTGCGTTGTCGGCCATGCTGGTATCACGG ATCAAGGTCATGGCCCGCCTGGACATTGCTGAAAAGCGTCAGCCCCAGGACGGCCGCATCACCTTGCGCGCGGCGGGGCG CGAAGTGGACGTACGGGTCTCGACCTTGCCCGGCATCCACGGCGAGCGGGTGGTGATGCGCGTGCTCGACAAGCAGGCCA GCCTGCTGGCGCTGGATAACCTGGGCATGCCGACAGCGGTATTGCAGGGCCTGCGCAGTTGCCTGGCGCGGCCCAACGGC ATCGTGTTGTCCACCGGCCCGACCGGTTCGGGCAAGACCACGACCCTGTACGCCAGCCTGAACAGCCTCAACGACGGCAG CCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCG GGCTGACATTTGCCAGTGGCCTGCGCGCCATCCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAG GAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAGCGCGGTAGG CGCAGTGACCCGCCTGCGCGACATGGGCATCGAGCCGTTCCTGATCGCCTCGTGCCTGCGCGGCGTCCTGGCCCAGCGCC TGGTGCGGCGTTTGTGCAGCTGTGCCGTGGCGCACCCGCTACAGGCTGCCGAGCGCGAGCTGTGGCCTGAGCTTGCGGCG TTGGGCAGCACTTATCACGCCGTGGGTTGCGAGCAGTGCCAGGGCAGCGGTTATATCGGCCGACTGGGGCTGTACGAATT CATCGAGCTGGACGCCGGGCTCATCGGCCTGTTGTACGACGGCGCCAGCGAGCTGGCCATGCAGGATTACCTGGCTGATC GGCGTCAGAGCCTGGTGGCGATGGCCAGCGATTGCCTGGCCCGCGGTGAGACCAGCCTGGCTGAAGTGCTGCGCGTGGTG CAGGGCTAA Protein sequence : MLPYRQARQSGVAMAPAEQGWQLWLRPDADNAQLQELLRVHGQPSLLEYLEPALFDERLGQLYQAGDAATEALIEGIGDQ VDLDSLMSEMPRIEDLLESDDEAPVIRLINGLFGQALRLRASDIHIETFEQSLVVRLRVDGHLREVLRPPRALSAMLVSR IKVMARLDIAEKRQPQDGRITLRAAGREVDVRVSTLPGIHGERVVMRVLDKQASLLALDNLGMPTAVLQGLRSCLARPNG IVLSTGPTGSGKTTTLYASLNSLNDGSRNILTVEDPVEYAIAGIGQTAINPRAGLTFASGLRAILRQDPDVIMLGEIRDQ ETAQIAVQASLTGHLVLSTLHTNSAVGAVTRLRDMGIEPFLIASCLRGVLAQRLVRRLCSCAVAHPLQAAERELWPELAA LGSTYHAVGCEQCQGSGYIGRLGLYEFIELDAGLIGLLYDGASELAMQDYLADRRQSLVAMASDCLARGETSLAEVLRVV QG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-106 | 57 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-106 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pput_1088 | YP_001266433.1 | type II secretion system protein E | VFG0182 | Protein | 4e-105 | 56 |
| Pput_1088 | YP_001266433.1 | type II secretion system protein E | VFG2048 | Protein | 1e-105 | 56 |
| Pput_1088 | YP_001266433.1 | type II secretion system protein E | VFG1876 | Protein | 2e-109 | 51 |
| Pput_1088 | YP_001266433.1 | type II secretion system protein E | VFG2426 | Protein | 2e-65 | 47 |
| Pput_1088 | YP_001266433.1 | type II secretion system protein E | VFG1880 | Protein | 3e-68 | 45 |
| Pput_1088 | YP_001266433.1 | type II secretion system protein E | VFG0112 | Protein | 5e-71 | 42 |
