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Name : Swit_0637 (Swit_0637) Accession : YP_001261143.1 Strain : Sphingomonas wittichii RW1 Genome accession: NC_009511 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 689952 - 691229 bp Length : 1278 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCACGACATCCGCCTGATCCGCGAAGATCCCGCCGCCTTCGATGCCGCCATCGCCCGCCGGGGAGCCGAGTCGGCATC GTCGCGGCTGCTCGCGCTCGACGAGCGCCGCCGCGCGATCGCGACCGAATTGCAGGCCGCGCAGACCCGCCGCAACGAGG CGTCGAAGGCGATCGGCCAGGCCAAGGCGCAGAAGGACGAAGCGACCGCATCCGCGCTGATGGCCGAGGTCGCCGCGCTC AAGGAGCGCATGCCCGCGCTGGAAGCCGAGGGCGCCGAGGTCGAGGCCGCGCTCGACGCCGCGCTCGCCGCGATCCCCAA CCTGCCCGCCGCCGACGTTCCCGATGGCGCCGACGAGCAGGACAATGCCGAGCAGCACCGCTGGGGCACCCCGCCCGCCT TCGCCTTCGAGGCGCGCGAGCATGCCGATTTCGCCGGTCCGCTGGGCCTCGACTTCGAGGCGGCCGCCGCGATCTCCGGC GCGCGCTTCGCGGTGCTCAAGGGCGGCATCGCCCGGCTGCAGCGCGCGCTCGGCGCGTTCATGCTCGACCGGCAGACCGC CGCCGGCTTCACCGAGGTGATCCCGCCGCTGCTGGTCCGCGACGAAGCGGTGTTCGGCACCGGCCAGCTCCCGAAGTTCG CCGAGGACCTGTTTCGCACCACCGACGGCCGCTGGCTGATCCCGACCGCCGAGGTCAGCCTGACCAACCTGGTCCGCGAG CAGATAGTGGCCGAGGCCGAACTGCCGATGAAGATGACCGCGCTCACCCCCTGCTTCCGTTCCGAGGCAGGTGCTGCGGG CCGCGACACGCGCGGGCTGATCCGCCAGCACCAGTTCGAGAAGGTCGAGCTGGTCGCGATCACCACGCCCGAACAGTCCG ACGCGGTCCACGAGGCGATGACCAAGGCGGCCGAGGCGATCCTGGAGGCGCTCGGCCTGCCCTATCGCCGCGTCCTGCTC TGCACCGGCGACATGGGCTTCACCGCGCGCAAGACCTTCGACCTGGAGGTCTGGCTGCCGGGCCAGGGCTGCTATCGCGA GATCAGCAGCGTCTCCAACTGCGGCGACTTCCAGGCGCGCCGGATGAACGCGCGCTATCGCCCGGCCGGCGAGAGCAAGG GCACCCGCTTCGTCCACACCCTCAACGGATCGGGCCTCGCGGTCGGCCGCACCCTCGTCGCGGTGCTGGAGAATTACCAG CAGGCCGACGGATCGGTGACGATCCCCGAGGCGCTCGTCCCCTATATGGGCGGGATCGCCGAGCTGCGCCCGGCATGA Protein sequence : MHDIRLIREDPAAFDAAIARRGAESASSRLLALDERRRAIATELQAAQTRRNEASKAIGQAKAQKDEATASALMAEVAAL KERMPALEAEGAEVEAALDAALAAIPNLPAADVPDGADEQDNAEQHRWGTPPAFAFEAREHADFAGPLGLDFEAAAAISG ARFAVLKGGIARLQRALGAFMLDRQTAAGFTEVIPPLLVRDEAVFGTGQLPKFAEDLFRTTDGRWLIPTAEVSLTNLVRE QIVAEAELPMKMTALTPCFRSEAGAAGRDTRGLIRQHQFEKVELVAITTPEQSDAVHEAMTKAAEAILEALGLPYRRVLL CTGDMGFTARKTFDLEVWLPGQGCYREISSVSNCGDFQARRMNARYRPAGESKGTRFVHTLNGSGLAVGRTLVAVLENYQ QADGSVTIPEALVPYMGGIAELRPA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-87 | 54 |
