Gene Information

Name : Swit_4516 (Swit_4516)
Accession : YP_001264992.1
Strain : Sphingomonas wittichii RW1
Genome accession: NC_009511
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4962677 - 4963354 bp
Length : 678 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein

DNA sequence : 
ATGCACGTCCTTCTGATCGAAGACGACCCCCGCGTCGCCGACCATGTCGGCAAGGGGCTGCGCGAGGCGGGGCATATCGT
CGAGACGGCGGCGGACGGGCGCGAGGGGCTGCTCCGCGCCGCCGCCGAGAGCTTCGACGTGATCGTCCTCGATCGCATGC
TCCCGCAGGTCGACGGGCTCAAGATCCTCCAGACGATCCGCGCCACCGGCGATGCGACCCCGGTGCTGATCCTCAGCGCG
CTCGGCGACGTCGACGAGCGGATCCGGGGTCTCCGCGCGGGCGGCGACGATTATCTGCCCAAGCCCTTCGCGCTGTCGGA
ACTGGTCGCGCGGGTCGAGGCGCTCGGCCGGCGCGGGCCCGCCATCGCCGAGGCGACCGAGCTGCGCAGCGGCGACCTGG
CGATCGACCTGCTCGGCCGCACCGTCACCCGCGCGGGCCGGCGCATCGACCTCACCCAGCGCGAATTCCGCATCCTCGAA
TATCTGGTGCGCAGCGCCGGCCGGGTGGTCACCCGCTCGATGCTGCTCGAACATGTCTGGGACTATAATTTCGATCCGCA
GACCAACATCATCGACCAGCATGTCAGCCGCCTGCGGCAGAAGCTCGACCGTGGCTTCGACACGCCGCTGATCGAGACGG
TGCGCGGCACCGGCTATGTCGTGCGCCCCTCGACGTGA

Protein sequence : 
MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGLKILQTIRATGDATPVLILSA
LGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGPAIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILE
YLVRSAGRVVTRSMLLEHVWDYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYVVRPST

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-40 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-39 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swit_4516 YP_001264992.1 two component transcriptional regulator BAC0125 Protein 2e-48 48
Swit_4516 YP_001264992.1 two component transcriptional regulator BAC0083 Protein 3e-49 46
Swit_4516 YP_001264992.1 two component transcriptional regulator BAC0111 Protein 4e-52 46
Swit_4516 YP_001264992.1 two component transcriptional regulator BAC0638 Protein 1e-44 46
Swit_4516 YP_001264992.1 two component transcriptional regulator BAC0197 Protein 8e-43 46
Swit_4516 YP_001264992.1 two component transcriptional regulator BAC0347 Protein 9e-49 45
Swit_4516 YP_001264992.1 two component transcriptional regulator BAC0308 Protein 5e-43 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swit_4516 YP_001264992.1 two component transcriptional regulator VFG1390 Protein 3e-41 45
Swit_4516 YP_001264992.1 two component transcriptional regulator VFG1389 Protein 2e-36 45
Swit_4516 YP_001264992.1 two component transcriptional regulator VFG0596 Protein 1e-40 43