Gene Information

Name : Swit_3493 (Swit_3493)
Accession : YP_001263977.1
Strain : Sphingomonas wittichii RW1
Genome accession: NC_009511
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 3842456 - 3843118 bp
Length : 663 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGATCCGGTTCGAGAATGTTTCGAAGACCTACCACATCCGCAAATTCCAGAAGCAGGTGTTCAGCAACCTGAATTTCGA
GATCCGCCGCGGCGAGAGCATCGGCATCTGCGGCGCCAACGGCGCGGGCAAGTCGACCCTGATGCGGCTGATCGCGGGAG
TCGAGCATCCGACCACCGGGCAGATCGAGCGGAGCATGACGACGAGCTGGCCGATCGGCTATTCGAGCGCCTTCCAGGCC
TCGATGACGGGCAGCGACAATGTCCGCTTCATCGCCCGCATCTATCGCCAGCCCGAGCAGGAGATCCTCGACTATGTCGA
GGACTTCGCCCAGCTCGGCGCCTATTTCCACCAGCCGGTGCGCACCTATTCGTCGGGCATGGCCGGGCGCCTCGCCTTCG
GCATCTCGCTGGCGATCAACTTCGACTGCTATCTGGTCGACGAGGTCACCGGCGCCGGCGACGAGCGCTTCCGCCGCCGC
TCGCACGAGGAACTGATGAAGCGCCGCGCCGAGGGAACGCTCGTCATGGTGTCGCACGATCCGCACATGCTGCAGCAATA
TTGCGAGCGCGGCGCCGTCCTCTACGGCGGCAACCTGACCTTCTACGACACGGTGGCCGAGGCGAGCGAGGTCCATCACG
GGCTTCAGATGCGCGCCGCATGA

Protein sequence : 
MIRFENVSKTYHIRKFQKQVFSNLNFEIRRGESIGICGANGAGKSTLMRLIAGVEHPTTGQIERSMTTSWPIGYSSAFQA
SMTGSDNVRFIARIYRQPEQEILDYVEDFAQLGAYFHQPVRTYSSGMAGRLAFGISLAINFDCYLVDEVTGAGDERFRRR
SHEELMKRRAEGTLVMVSHDPHMLQQYCERGAVLYGGNLTFYDTVAEASEVHHGLQMRAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 6e-49 47
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 2e-46 45
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 1e-46 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swit_3493 YP_001263977.1 ABC transporter-like protein VFG0696 Protein 5e-51 49
Swit_3493 YP_001263977.1 ABC transporter-like protein VFG0258 Protein 2e-49 47
Swit_3493 YP_001263977.1 ABC transporter-like protein VFG2563 Protein 1e-52 47
Swit_3493 YP_001263977.1 ABC transporter-like protein VFG1449 Protein 7e-47 45