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Name : Swit_3390 (Swit_3390) Accession : YP_001263874.1 Strain : Sphingomonas wittichii RW1 Genome accession: NC_009511 Putative virulence/resistance : Unknown Product : integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4584 EC number : - Position : 3717388 - 3718893 bp Length : 1506 bp Strand : + Note : PFAM: Integrase, catalytic region DNA sequence : TTGGAGACAGTGGTTCGGATTCGGCGCGAGTATGCCGGCGGCAAGGCGATCAAGGCGATCGCGCGGGATTTGCATGTGTC GCGGAAGGTGATCCGCAAGGCGATCCGGGCGCCGGAAGGCGCATTCGACTATCAGCGCAAGGTTCAGCCACTGCCTAGGA TCGGGCCGTTTCAGGATCGCCTGAACACACTGCTGGAAGAGAACGAGGTGCGCGGCAGGCGCGAGCGACTGCGGATGACG CGGATACATGATCTGCTGGAGCGCGAAGGTTTTGAGGGTTCCTACGATGCCGTTCGGCGCTACGCGGCGCGCTGGAAGGC CGACCGGCGCAAGGATGCCGGCGATGGTGTCACCGCCTTCATCCCGCTGATGTTCAAGCCGGGCGAGGCCTACCAGTTCG ACTGGAGCCATGAGGATGTGGAGATCGCCGGCAAGCCGATGCGCGTGAAGGTTGCGCATATGCGGCTGTGTGCATCGCGG GCGGTCTATGTCCGGGCCTATCCGCGCGAGAGTCAGGAGATGCTGTTCGACGCGCATGCGCGCGGCTTTGCTTTCTTCGG CGGCGTGCCGGGCCGCGGCATCTACGATAATATGAAGACGGCGGTGACGAGCGTGTTCACGGGGAAGGAGCGGGTCTTCA ACCGGCGGTTCCTGATCATGACCGACCATTATATGGTCGAGCCCACCGCCTGCTCGCCGGCGGCGGGATGGGAGAAGGGC CAGGTCGAGAACCAGGTGCAGACGATCCGGGGCCGCTTCTTCCAACCCCGGTTGCGGTTCGCCAGCCTCGACGAGCTCAA TGGCTGGCTGGAGGCCGAGTGCCAGCGCTGGGCGGAACGACAGGCACACCCGGAACAGGGCGAGCTGACCGTGGCGCAGG CGCTGGAGATCGAGCGATCGGCACTGCAGCCGATGCTGGGACCGTTCGACGGCTTTAACGAGAGCGAGCATGCGGTGACG GGCACCTGCCTGATCAGCTTCGATCGCAACCGCTACTCGGTTCTCTCGACGGTGGCGCGGCGGACGGTGCAGGTCCGGGC CTATGCCGACCGCATTGTCGTGCGCTGCGGCGAGGAGGTTGTCGCCGAGCATCCCCGCTACTTCGGGCGCAACCGCACGA TCTATGACCCCTGGCATTATCTGCCGGTACTGGCCCGCAAGCCCGGAGCGCTGCGGAACGGCGCGCCCTTCCAGGACTGG GATCTGCCGCCGGCGCTGGCGCGCCTGCGCCGCAAGCTTGGCAATGGCGACGATGCCGACCGCCGGTTCGTCCGTGTGCT GTCGGCCGTGCTGACCGATGGTCTGGAGCCGGTCGAAGCGGCCGTCCGCGAGGCATTGGCGACCGGCACGGCGAGCGACG ACCTGATCCTCAACATCCTGGCGCGGCGCCGCGAACCGCCGCGACCGCTCACCATCATCACCTCCGAAGACAGCGCCTTG CGCCATCCGCCGATCGCCGACTGCGCCCGTTACGACCAGCTGAGGACCTTCGATGCAGCGGCATGA Protein sequence : METVVRIRREYAGGKAIKAIARDLHVSRKVIRKAIRAPEGAFDYQRKVQPLPRIGPFQDRLNTLLEENEVRGRRERLRMT RIHDLLEREGFEGSYDAVRRYAARWKADRRKDAGDGVTAFIPLMFKPGEAYQFDWSHEDVEIAGKPMRVKVAHMRLCASR AVYVRAYPRESQEMLFDAHARGFAFFGGVPGRGIYDNMKTAVTSVFTGKERVFNRRFLIMTDHYMVEPTACSPAAGWEKG QVENQVQTIRGRFFQPRLRFASLDELNGWLEAECQRWAERQAHPEQGELTVAQALEIERSALQPMLGPFDGFNESEHAVT GTCLISFDRNRYSVLSTVARRTVQVRAYADRIVVRCGEEVVAEHPRYFGRNRTIYDPWHYLPVLARKPGALRNGAPFQDW DLPPALARLRRKLGNGDDADRRFVRVLSAVLTDGLEPVEAAVREALATGTASDDLILNILARRREPPRPLTIITSEDSAL RHPPIADCARYDQLRTFDAAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| istA | AAN62228.1 | putative transposase | Not tested | PAGI-3(SG) | Protein | 1e-103 | 47 |
| unnamed | AAN85144.1 | unknown | Not tested | Hrp PAI | Protein | 3e-84 | 44 |
| EC042_4098 | YP_006098381.1 | transposase | Not tested | Tn2411 | Protein | 2e-74 | 42 |
