|
Name : Swit_2584 (Swit_2584) Accession : YP_001263080.1 Strain : Sphingomonas wittichii RW1 Genome accession: NC_009511 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2867667 - 2869127 bp Length : 1461 bp Strand : - Note : TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase DNA sequence : ATGACCGAGGCGCTTCCCTACGGCTTCGCCCGCCGCCACGGCGTCCTCGTCCAGCCCGCGGGAGACGGCGGCGCGCGCTG CCTGTTCCGCGCCGGCGCCAGCCCCGAGGCGATGCTCGAGGTGCAGCGCCGCTTCGGCGCCGGCCTCGCCTTCGAGCCGG TGGCCGAGGAGGCGTTCGAGAGCGCCGTCGCCGCCGCCTATCGCGACAGCGCGGGCGGGACGATGGACCTCGCCGGCACC GACGACTTGGCGACGCTGGCGGACAGCGCGGCGGCGGTCGACGACCTGCTCGACAGCCGCGACGACAGCCCGGTGATCCG CCTGATCAACGCGTTGCTGCTCCAGGCGGTGCGCGACGGCGCGTCGGACATCCATGTCGAGACGCAGGAGAAAAGGCTGA TCGTCCGCTTTCGCATCGACGGCGTGCTGCGCGACGTGGTCGAGCCGAAGCGCGCGCTGGCGCCGCTGCTGGTCAGCCGC ATCAAGGTGATGGCGCGGCTCGACATCGCCGAGAAGCGGGTGCCGCAGGACGGCCGCGTCACCCTGCGGGTCGGCGGCTA CGACATCGACGTGCGCGTCTCGACCATCCCGACCCAGCATGGCGAGCGGGTGGTGATGCGCCTGCTCGATCGCGGCTCGA CCGGGCTCGACACCGCCGCGCTCGGCCTGTCGGAGCGCGACCGCGACGTCTTCCTCGGCCTGCTCGACCGGCCGCACGGC ATATTGCTCGTCACCGGCCCGACCGGATCGGGCAAGACGACGACGCTCTACACCGCGCTCACCCACCTCAACGACCGCAA GCGCAACATCATGACGGTCGAGGACCCGATCGAATATGAGCTGGCGGGCGTCGCCCAGACCCAGGTCAACGCCCGGACGG GAATGACCTTCGCGCGTGGCCTGCGCGCCATCCTGCGCCAGGACCCCGACGTGATCATGGTCGGCGAGATCCGCGACCAG GAGACCGCCGAGGTCGCGGTGCGATCGTCGATGACCGGCCATTTCGTGCTGTCGACGCTGCACACCAACAGCGCGATCGG GTCGATCACCCGGCTGATCGACATGGGGGTGGAGCGCTACCTGCTCGCGCCGATGGTGGTCGGGCTGATCGCCCAGCGGC TGGTGCGGCGGCTGTGCGAGCATTGCCGCTGGCAGGACCGCGCGACCGAGGCCGATTCGGCGCTGCTCGGCCGCGCGCTC AAGCCCGGCAAGAAGATCTGGCGCGCGCAGGGCTGCGAACATTGCCATGGCGAGGGCTATAAGGGCCGGATGGCGCTGTA CGAGGTGGTCGCCGCCGACGACGAGCTGCGCCGCCTGATCCACGACGGCGCGTCGGAGGCGGAGCTGACCGCCGCCGCGC GCAAGGCCGGGCCGAGCCTGCTCGACGACGGCATCGCCAAGCTGCGCGCCGGCCTCACCACGATCGAGGAAGTCGCCCGC GTCGTCCAGGACGAGGGCTGA Protein sequence : MTEALPYGFARRHGVLVQPAGDGGARCLFRAGASPEAMLEVQRRFGAGLAFEPVAEEAFESAVAAAYRDSAGGTMDLAGT DDLATLADSAAAVDDLLDSRDDSPVIRLINALLLQAVRDGASDIHVETQEKRLIVRFRIDGVLRDVVEPKRALAPLLVSR IKVMARLDIAEKRVPQDGRVTLRVGGYDIDVRVSTIPTQHGERVVMRLLDRGSTGLDTAALGLSERDRDVFLGLLDRPHG ILLVTGPTGSGKTTTLYTALTHLNDRKRNIMTVEDPIEYELAGVAQTQVNARTGMTFARGLRAILRQDPDVIMVGEIRDQ ETAEVAVRSSMTGHFVLSTLHTNSAIGSITRLIDMGVERYLLAPMVVGLIAQRLVRRLCEHCRWQDRATEADSALLGRAL KPGKKIWRAQGCEHCHGEGYKGRMALYEVVAADDELRRLIHDGASEAELTAAARKAGPSLLDDGIAKLRAGLTTIEEVAR VVQDEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-103 | 58 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-103 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Swit_2584 | YP_001263080.1 | general secretory pathway protein E | VFG0182 | Protein | 2e-119 | 65 |
| Swit_2584 | YP_001263080.1 | general secretory pathway protein E | VFG2048 | Protein | 8e-106 | 59 |
| Swit_2584 | YP_001263080.1 | general secretory pathway protein E | VFG1876 | Protein | 6e-107 | 56 |
| Swit_2584 | YP_001263080.1 | general secretory pathway protein E | VFG2426 | Protein | 5e-71 | 48 |
