Gene Information

Name : Swit_1516 (Swit_1516)
Accession : YP_001262017.1
Strain : Sphingomonas wittichii RW1
Genome accession: NC_009511
Putative virulence/resistance : Resistance
Product : DEAD/DEAH box helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1200
EC number : -
Position : 1679698 - 1681758 bp
Length : 2061 bp
Strand : -
Note : PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like

DNA sequence :
ATGCGGCCCGATATACTCAATCCGTTGTTCGCCGAGGTCGAGGCGCTGAAGGGCGTCGGGCCGACGCTCGCCAAGCCGCT
GCGCAAGCTGGAGCTCGAACGGGTCGTCGACCTGCTCTTCCATCTTCCCACCGGATCGATCGACCGCAAGCCGGTCGACA
CGGTCGAGGCCGAGGACGCCGGCCGGATCGTCACCGTCCGGCTGGTGCCGACCAGCTATCGCGCGTCCGGCGGGCGCGGG
CCGTTCCGGGTCGGCGCGACCGACCAGGCGGGCAACGTCGTCAGCCTCGTCTATTTCGGCGGCAATCCCGGCTGGGCGAA
GAAGCTGCTGCCGATCGGCGAGCCGCGCATCGTCTCGGGCCGGCTGGATCTCTACGGGCAGGAGCTCCAGATCGTCCATC
CCGATCATGTCCTGTCCCCGGCCGAGGCGGCCGACCTGCCGACCCGCGAGAGCGTCTATCCGCTGTCGGAGGGGATCACC
TCGCGGCGGCTCGGCCAGCTCATCGAGCAGGGGATCGAACGCGCGCCCGAGCTGCCTGAATGGATCGAGCCGAGCCTGCT
CCAGGCGCGCGGCTGGCCGTCCTGGCATGACGCGGTCGTCCGCGCCCATGCCGACGCGCAGGACGAACCGGCGCGCGCGC
GGCTCGCCTATGACGAGCTGTTCGCCAACCAGCTCGCGCTGATGCTGGTGCGCGCCTCCTCGCGCAAGCGGCGCGGCCTG
CCGCTCAAGGGCGACGGCCGGCTGCGCGACCAGCTCAAGCTTCCCTATGCCCCGACCGGCGCGCAGAGCCGCGCGGTGGC
CGAGATCGAGGGCGACCTCGTCCAGCCGGCGCCGATGACCCGCCTGCTCCAGGGCGACGTCGGCTCGGGCAAGACGCTGG
TCGCGACGATGGCGCTGCTCTGCGCGGTCGAGGCGGGGGCGCAGGGCGCGCTGCTGGCGCCGACCGAGATCCTCGCCCGC
CAGCATTTCGAGACGCTGGGCCGCACCCTCGCCGGCCTGCCCGTCAACGTCGCGATCCTGACGGGGCGGGAAAAGGGCAA
GGCGCGCGAGGCGACGCTGATGGCGCTGGCCGACGGATCGATCGACATCCTCGTCGGCACCCATGCGATCTTCCAGGAGA
AGGTCGGCTACCGCAAGCTCGGCCTCGCCGTGGTCGACGAGCAGCATCGCTTCGGCGTCGCCCAGCGGATGATGCTCCAG
GCCAAGGCCGAGCGGCCGCCGCACCTGCTGGTGATGACGGCGACCCCGATCCCGCGCACCCTGACGCTCAGCCATTATGG
CGAGATGGACGTCAGCCGCTTGGACGAGATGCCGCCGGGCCGCCAGCCGATCGAGACGCGGGTGATCTCGGGCGAGCGGC
TCGACGAGGTCGCGCAGGCGCTCGGCCGCCACCTCGCCGCGGGCCGCCAGGCCTATTGGGTCTGCCCGCTGGTCGAGGAG
AGCGAGCAGTCCGACCTCGCCGCCGCCGAGGGGCGGGCGGAGAGCCTGCGGCAATGGTTCGGCGACAAGGTCGGCGTCGT
CCATGGCCGGATGAAGGGGCCCGAGAAGGACGCGGTGATGGCCGAGTTCCAGGCGGGCCGGATCGGCGTGCTGGTCGCGA
CGACGGTGATCGAGGTCGGCGTTGACGTCCCCAACGCGACGCTGATGATCATCGAGGGCGCGGATCGCTTCGGTCTCGCC
CAGCTCCACCAGCTGCGCGGCCGGGTGGGGCGCGGCGACCAGCGATCGGTCTGCCTGCTGCTGCGCGGCAACGCCCTGTC
TGAGACCTCGCGCGCGCGGCTGGCGCTGATGCGCGAGACCAATGACGGCTTCCGCATCGCCGAGGAGGATCTGCGCCTGC
GCGGCGCGGGCGAGATATTGGGGACCCGCCAGTCGGGCGAGGCGGCCTTCCGTCTCGCCGGTCCCGAGCGGACCGCCGCG
CTGATCGAGGCGGCGACCCAGGACGCCCGCCTGCTGGTCGACCGCGACGGCGGTCTCGACAGCGAGCGCGGACAGGCGGC
GCGGATCGCCCTCTATCTGTTCGAACGCGACGCCGCCGTGGGATTGCTGCGGGCGGGCTAA

Protein sequence :
MRPDILNPLFAEVEALKGVGPTLAKPLRKLELERVVDLLFHLPTGSIDRKPVDTVEAEDAGRIVTVRLVPTSYRASGGRG
PFRVGATDQAGNVVSLVYFGGNPGWAKKLLPIGEPRIVSGRLDLYGQELQIVHPDHVLSPAEAADLPTRESVYPLSEGIT
SRRLGQLIEQGIERAPELPEWIEPSLLQARGWPSWHDAVVRAHADAQDEPARARLAYDELFANQLALMLVRASSRKRRGL
PLKGDGRLRDQLKLPYAPTGAQSRAVAEIEGDLVQPAPMTRLLQGDVGSGKTLVATMALLCAVEAGAQGALLAPTEILAR
QHFETLGRTLAGLPVNVAILTGREKGKAREATLMALADGSIDILVGTHAIFQEKVGYRKLGLAVVDEQHRFGVAQRMMLQ
AKAERPPHLLVMTATPIPRTLTLSHYGEMDVSRLDEMPPGRQPIETRVISGERLDEVAQALGRHLAAGRQAYWVCPLVEE
SEQSDLAAAEGRAESLRQWFGDKVGVVHGRMKGPEKDAVMAEFQAGRIGVLVATTVIEVGVDVPNATLMIIEGADRFGLA
QLHQLRGRVGRGDQRSVCLLLRGNALSETSRARLALMRETNDGFRIAEEDLRLRGAGEILGTRQSGEAAFRLAGPERTAA
LIEAATQDARLLVDRDGGLDSERGQAARIALYLFERDAAVGLLRAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
recG CAJ77039.1 ATP-dependent DNA helicase Not tested AbaR1 Protein 1e-152 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swit_1516 YP_001262017.1 DEAD/DEAH box helicase BAC0356 Protein 2e-106 44