|
Name : Swit_1516 (Swit_1516) Accession : YP_001262017.1 Strain : Sphingomonas wittichii RW1 Genome accession: NC_009511 Putative virulence/resistance : Resistance Product : DEAD/DEAH box helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1200 EC number : - Position : 1679698 - 1681758 bp Length : 2061 bp Strand : - Note : PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like DNA sequence : ATGCGGCCCGATATACTCAATCCGTTGTTCGCCGAGGTCGAGGCGCTGAAGGGCGTCGGGCCGACGCTCGCCAAGCCGCT GCGCAAGCTGGAGCTCGAACGGGTCGTCGACCTGCTCTTCCATCTTCCCACCGGATCGATCGACCGCAAGCCGGTCGACA CGGTCGAGGCCGAGGACGCCGGCCGGATCGTCACCGTCCGGCTGGTGCCGACCAGCTATCGCGCGTCCGGCGGGCGCGGG CCGTTCCGGGTCGGCGCGACCGACCAGGCGGGCAACGTCGTCAGCCTCGTCTATTTCGGCGGCAATCCCGGCTGGGCGAA GAAGCTGCTGCCGATCGGCGAGCCGCGCATCGTCTCGGGCCGGCTGGATCTCTACGGGCAGGAGCTCCAGATCGTCCATC CCGATCATGTCCTGTCCCCGGCCGAGGCGGCCGACCTGCCGACCCGCGAGAGCGTCTATCCGCTGTCGGAGGGGATCACC TCGCGGCGGCTCGGCCAGCTCATCGAGCAGGGGATCGAACGCGCGCCCGAGCTGCCTGAATGGATCGAGCCGAGCCTGCT CCAGGCGCGCGGCTGGCCGTCCTGGCATGACGCGGTCGTCCGCGCCCATGCCGACGCGCAGGACGAACCGGCGCGCGCGC GGCTCGCCTATGACGAGCTGTTCGCCAACCAGCTCGCGCTGATGCTGGTGCGCGCCTCCTCGCGCAAGCGGCGCGGCCTG CCGCTCAAGGGCGACGGCCGGCTGCGCGACCAGCTCAAGCTTCCCTATGCCCCGACCGGCGCGCAGAGCCGCGCGGTGGC CGAGATCGAGGGCGACCTCGTCCAGCCGGCGCCGATGACCCGCCTGCTCCAGGGCGACGTCGGCTCGGGCAAGACGCTGG TCGCGACGATGGCGCTGCTCTGCGCGGTCGAGGCGGGGGCGCAGGGCGCGCTGCTGGCGCCGACCGAGATCCTCGCCCGC CAGCATTTCGAGACGCTGGGCCGCACCCTCGCCGGCCTGCCCGTCAACGTCGCGATCCTGACGGGGCGGGAAAAGGGCAA GGCGCGCGAGGCGACGCTGATGGCGCTGGCCGACGGATCGATCGACATCCTCGTCGGCACCCATGCGATCTTCCAGGAGA AGGTCGGCTACCGCAAGCTCGGCCTCGCCGTGGTCGACGAGCAGCATCGCTTCGGCGTCGCCCAGCGGATGATGCTCCAG GCCAAGGCCGAGCGGCCGCCGCACCTGCTGGTGATGACGGCGACCCCGATCCCGCGCACCCTGACGCTCAGCCATTATGG CGAGATGGACGTCAGCCGCTTGGACGAGATGCCGCCGGGCCGCCAGCCGATCGAGACGCGGGTGATCTCGGGCGAGCGGC TCGACGAGGTCGCGCAGGCGCTCGGCCGCCACCTCGCCGCGGGCCGCCAGGCCTATTGGGTCTGCCCGCTGGTCGAGGAG AGCGAGCAGTCCGACCTCGCCGCCGCCGAGGGGCGGGCGGAGAGCCTGCGGCAATGGTTCGGCGACAAGGTCGGCGTCGT CCATGGCCGGATGAAGGGGCCCGAGAAGGACGCGGTGATGGCCGAGTTCCAGGCGGGCCGGATCGGCGTGCTGGTCGCGA CGACGGTGATCGAGGTCGGCGTTGACGTCCCCAACGCGACGCTGATGATCATCGAGGGCGCGGATCGCTTCGGTCTCGCC CAGCTCCACCAGCTGCGCGGCCGGGTGGGGCGCGGCGACCAGCGATCGGTCTGCCTGCTGCTGCGCGGCAACGCCCTGTC TGAGACCTCGCGCGCGCGGCTGGCGCTGATGCGCGAGACCAATGACGGCTTCCGCATCGCCGAGGAGGATCTGCGCCTGC GCGGCGCGGGCGAGATATTGGGGACCCGCCAGTCGGGCGAGGCGGCCTTCCGTCTCGCCGGTCCCGAGCGGACCGCCGCG CTGATCGAGGCGGCGACCCAGGACGCCCGCCTGCTGGTCGACCGCGACGGCGGTCTCGACAGCGAGCGCGGACAGGCGGC GCGGATCGCCCTCTATCTGTTCGAACGCGACGCCGCCGTGGGATTGCTGCGGGCGGGCTAA Protein sequence : MRPDILNPLFAEVEALKGVGPTLAKPLRKLELERVVDLLFHLPTGSIDRKPVDTVEAEDAGRIVTVRLVPTSYRASGGRG PFRVGATDQAGNVVSLVYFGGNPGWAKKLLPIGEPRIVSGRLDLYGQELQIVHPDHVLSPAEAADLPTRESVYPLSEGIT SRRLGQLIEQGIERAPELPEWIEPSLLQARGWPSWHDAVVRAHADAQDEPARARLAYDELFANQLALMLVRASSRKRRGL PLKGDGRLRDQLKLPYAPTGAQSRAVAEIEGDLVQPAPMTRLLQGDVGSGKTLVATMALLCAVEAGAQGALLAPTEILAR QHFETLGRTLAGLPVNVAILTGREKGKAREATLMALADGSIDILVGTHAIFQEKVGYRKLGLAVVDEQHRFGVAQRMMLQ AKAERPPHLLVMTATPIPRTLTLSHYGEMDVSRLDEMPPGRQPIETRVISGERLDEVAQALGRHLAAGRQAYWVCPLVEE SEQSDLAAAEGRAESLRQWFGDKVGVVHGRMKGPEKDAVMAEFQAGRIGVLVATTVIEVGVDVPNATLMIIEGADRFGLA QLHQLRGRVGRGDQRSVCLLLRGNALSETSRARLALMRETNDGFRIAEEDLRLRGAGEILGTRQSGEAAFRLAGPERTAA LIEAATQDARLLVDRDGGLDSERGQAARIALYLFERDAAVGLLRAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| recG | CAJ77039.1 | ATP-dependent DNA helicase | Not tested | AbaR1 | Protein | 1e-152 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Swit_1516 | YP_001262017.1 | DEAD/DEAH box helicase | BAC0356 | Protein | 2e-106 | 44 |
