Gene Information

Name : Swit_0125 (Swit_0125)
Accession : YP_001260635.1
Strain : Sphingomonas wittichii RW1
Genome accession: NC_009511
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 120900 - 121586 bp
Length : 687 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGACAGCATCCATCATCGACGCCCGCGCCGTTCGTCTCGCGCTGGGCAAGGGATCGGCGCGGGTCGATATCCTCAAGGG
CATCGACCTCGCGATCCGGGCGGGCGAGACGGTGGCGCTGCTCGGGCCGTCGGGATCGGGCAAGTCGTCGCTGATGGCGG
TGCTGTCGGGCCTCGAACGCGCCGATGAGGGCAACATCGACATCGCCGGGCTCGACTTCGGCCGGCTCGACGAGGACGCG
CTCGCCGCCGCGCGGCGCGGGCGGATCGGGATCATCCTCCAGGCCTTCCACCTGCTGCCGACGATGACCGCGCTGGAGAA
TGTCGCGGTGCCGCTCGAACTGGCCGGCGAGGCCGATGCCTTCGCCCGCGCCGCCGCCGAGCTGGAGGCGGTCGGCCTCG
GCCATCGGCTCGACCATTATCCGTCGCAGCTCTCGGGCGGCGAGCAGCAGCGGGTCGCGATCGCCCGCGCCACCGCGCCG
CGCCCCGCCATCCTGTTCGCCGACGAACCCACCGGCAATCTCGACGGCGCCACCGGCGCGACGATCATGGACCTGCTGTT
CGACCGCCAGCGCAAGACCGGCGCGACCCTGCTCGTCATCACCCATGATCCGGCGCTGGCGGCGCGCTGCGCCCGGATCG
TCGAGATGCGCGACGGGGCGATCCTTTCCGACCGGGCGGCCGCGTGA

Protein sequence : 
MTASIIDARAVRLALGKGSARVDILKGIDLAIRAGETVALLGPSGSGKSSLMAVLSGLERADEGNIDIAGLDFGRLDEDA
LAAARRGRIGIILQAFHLLPTMTALENVAVPLELAGEADAFARAAAELEAVGLGHRLDHYPSQLSGGEQQRVAIARATAP
RPAILFADEPTGNLDGATGATIMDLLFDRQRKTGATLLVITHDPALAARCARIVEMRDGAILSDRAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-15 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-17 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-17 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-17 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swit_0125 YP_001260635.1 ABC transporter-like protein NC_008702.1.4606598. Protein 4e-14 50
Swit_0125 YP_001260635.1 ABC transporter-like protein NC_012469.1.7686878. Protein 3e-14 45