Gene Information

Name : Swit_4929 (Swit_4929)
Accession : YP_001260316.1
Strain :
Genome accession: NC_009508
Putative virulence/resistance : Unknown
Product : IstB ATP binding domain-containing protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 40565 - 41422 bp
Length : 858 bp
Strand : -
Note : PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase

DNA sequence :
ATGAATGCCATTGCCCCATCCACCCGTGTCGACTCCATCCGCCGGAGCCTCGTCAGCCTCAAGATGCCCCGGGCGCTCGA
GATCCTCGATGCGACCCTGCGCCGTATCGAACAGGGCCAGATCGACGGCATCGAAGCGCTCGACGAGCTGCTGGGCGAGG
AGCTGTCGCTGCGCGAGAACCGGCGGATCAAGGCCGCTCTGCGCATGGCGCGCCTGCCTGTGGTGAAGACCCTGGCGGGC
TACGACTTCTCGTTCCAGCCCTCGCTCGACAGGAACCGCATCCTCGCGCTCGCCGGCCTCGACTTCATAGAGCGCGCCGA
GGTCGTCCACCTGCTGGGACCGCCCGGCACCGGCAAAAGCCACATTGCCACCGCACTCGCGGTCGAGGCCGTGCGCGCCG
GCAAGGCGGTCTACTTCATCCCGCTCGCCGACCTCATCGCCCAACTCACCAAGGCCGAACGCGAAGGCACGCTCCGGGAG
AAGATCCGCTTCCTCGCCAGGGCATCGCTGCTGGTTGTCGACGAGATCGGATACCTGCCGGTCACACCGGGTGGTGCGAA
CCTGTTCTTCCAGCTCGTCAACGCCCGCTACGAAAAGGGCGCCATGATCCTCACCTCCAATCGCGGCTTCGCCGAATGGG
GCGAAGTGTTCGGCGATCCCGTCGTTGCCACCGCGCTGCTCGACAGGCTGCTGCACCATGCCGTGGTCATCCAGATCGAA
GGTTCCAGTTATCGCATGCGTGAGCACGCCGCGCTCGTCCCCGAAAACGTCCGCGCCGGCGTCGCGTTCAATCCACCCCA
AGGTAAGCGCCGCGGACGACCACCAAAGAAAGCCAATCCCGATCCCGATTACGGCTGA

Protein sequence :
MNAIAPSTRVDSIRRSLVSLKMPRALEILDATLRRIEQGQIDGIEALDELLGEELSLRENRRIKAALRMARLPVVKTLAG
YDFSFQPSLDRNRILALAGLDFIERAEVVHLLGPPGTGKSHIATALAVEAVRAGKAVYFIPLADLIAQLTKAEREGTLRE
KIRFLARASLLVVDEIGYLPVTPGGANLFFQLVNARYEKGAMILTSNRGFAEWGEVFGDPVVATALLDRLLHHAVVIQIE
GSSYRMREHAALVPENVRAGVAFNPPQGKRRGRPPKKANPDPDYG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 1e-44 47
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 1e-44 44
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 1e-44 44
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 1e-44 44
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 1e-44 44
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 2e-44 44
api84 CAF28558.1 putative transposase Not tested YAPI Protein 1e-44 44
unnamed CAA21402.1 - Not tested HPI Protein 2e-44 44
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 1e-44 44
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 1e-44 44
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 2e-44 44
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 2e-44 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swit_4929 YP_001260316.1 IstB ATP binding domain-containing protein VFG1627 Protein 7e-45 44
Swit_4929 YP_001260316.1 IstB ATP binding domain-containing protein VFG1606 Protein 7e-45 44
Swit_4929 YP_001260316.1 IstB ATP binding domain-containing protein VFG1515 Protein 7e-45 44
Swit_4929 YP_001260316.1 IstB ATP binding domain-containing protein VFG1663 Protein 7e-45 44