Gene Information

Name : Swit_5079 (Swit_5079)
Accession : YP_001260458.1
Strain :
Genome accession: NC_009508
Putative virulence/resistance : Unknown
Product : IS66 Orf2 family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 195282 - 195623 bp
Length : 342 bp
Strand : -
Note : PFAM: IS66 Orf2 family protein

DNA sequence :
ATGATCCCTTCCGGCGCGCGGGTGTGGATCGCGATGGGCCACACCGATATGCGTCGTGGGATGCAGGGTCTGGCGGCGAT
GGTCCAGCAGCATTTCACGAAGGACCCATTCGCCGGCGACCTCTGGGTCTTCCGGGGGCGCAGCGGCACGCTGGTGAAGA
TCATATGGCACGACGGGGTCGGCATGTCGCTCTACGCCAAGCGGCTCGAGAAGGGACGTTTCATCTGGCCTTCCGCCAGG
GACGGTGTGGTGTCGCTGACGAGCTCCCAGCTTGCCTGCCTGCTCGACGGGATCGACTGGCGCAACCCGCAATATTCCTG
GCGGCCACAGAGTGCCGGATAG

Protein sequence :
MIPSGARVWIAMGHTDMRRGMQGLAAMVQQHFTKDPFAGDLWVFRGRSGTLVKIIWHDGVGMSLYAKRLEKGRFIWPSAR
DGVVSLTSSQLACLLDGIDWRNPQYSWRPQSAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL99258.1 unknown Not tested LEE Protein 2e-25 58
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 3e-25 58
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 2e-25 58
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 3e-25 58
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 3e-25 58
unnamed AAC31493.1 L0014 Not tested LEE Protein 2e-25 58
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 2e-25 58
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 3e-25 58
BCAM0247 YP_002232879.1 putative transposase Not tested BcenGI11 Protein 1e-23 57
unnamed AAL08461.1 unknown Not tested SRL Protein 4e-25 57
c3561 NP_755436.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-25 57
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 1e-24 57
ECUMN_3327 YP_002414007.1 putative transposase ORF2, IS66 family Not tested Not named Protein 2e-25 57
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 1e-24 57
l0014 CAD33776.1 L0014 protein Not tested PAI I 536 Protein 6e-19 55
ECO103_3553 YP_003223420.1 hypothetical protein Not tested LEE Protein 1e-26 54
Z4316 NP_289542.1 hypothetical protein Not tested OI-122 Protein 1e-26 54
Z1160 NP_286695.1 hypothetical protein Not tested TAI Protein 5e-26 53
Z1599 NP_287103.1 hypothetical protein Not tested TAI Protein 5e-26 53
ECO103_3567 YP_003223430.1 hypothetical protein Not tested LEE Protein 3e-25 53
Z4338 NP_289563.1 hypothetical protein Not tested OI-122 Protein 3e-25 53
aec52 AAW51735.1 Aec52 Not tested AGI-3 Protein 3e-27 52
unnamed ADD91739.1 hypothetical protein Not tested PAI-I AL862 Protein 3e-27 52
ECUMN_3364 YP_002414037.1 putative transposase ORF2, IS66 family Not tested Not named Protein 6e-26 51
pB171ORF50 CAD66190.1 ORF50 protein of pB171 Not tested PAI III 536 Protein 6e-27 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swit_5079 YP_001260458.1 IS66 Orf2 family protein VFG0792 Protein 8e-26 58
Swit_5079 YP_001260458.1 IS66 Orf2 family protein VFG1709 Protein 8e-26 58
Swit_5079 YP_001260458.1 IS66 Orf2 family protein VFG1698 Protein 7e-26 57
Swit_5079 YP_001260458.1 IS66 Orf2 family protein VFG1052 Protein 1e-25 57
Swit_5079 YP_001260458.1 IS66 Orf2 family protein VFG1517 Protein 3e-19 55
Swit_5079 YP_001260458.1 IS66 Orf2 family protein VFG1737 Protein 2e-26 51
Swit_5079 YP_001260458.1 IS66 Orf2 family protein VFG1665 Protein 2e-27 51