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Name : Swit_5071 (Swit_5071) Accession : YP_001260451.1 Strain : Genome accession: NC_009508 Putative virulence/resistance : Unknown Product : integrase catalytic subunit Function : - COG functional category : - COG ID : - EC number : - Position : 186108 - 187610 bp Length : 1503 bp Strand : - Note : PFAM: Integrase, catalytic region DNA sequence : GTGCCGGGTTGCCAAGTCAACGATCATCAAATGAGGCTTTTCATGAAATTGCGACAGACCAACCCGGTCCCGGTGGCTGC GGCGAAGGCCGGGTTCAGCACCGCGACGGGCTACCGGATCGCGAGCGATCCGGTGCTTCCTTCACACCGTAAAGCGCCCC GCGGCCGACGGCGACCTGATCCGTTGGAATCGATCTTCGAGAGCGAGATCGTACCAATGCTGAAGGCGGCACCTGGCTTG CGGGCGGTGGCGATCTTCGAGGAGATGCGCCGTCGCCATCCCGATCTCGATTTTGGGGTTCGCCGCACGATGGAGCGTCG TATCCGTGCCTGGCGGGCCGTTCATGGCCCGGAACAGGAAGTGATCTTCCGCCAGACTCATGAGCCGGGGCGAATGGGCC TTTCGGACTTCACCGACATGAGGAGCCTCAAAGTCACGATCGCGGGTGCGCCCCTCGATCACCTGCTTTACCACTTCCGC CTGGTGTGGTCAGGCTTCGAACATGCCCATGTCATCCTGGGCGGCGAGAGCTATGTCGCATTGGCTGAGGGGCTGCAGAA CGCGCTTTGGATGCTGGGCGGCGCGCCGGGCGAACACCGCAGCGACAGTCTGTCGGCCGCGTTTCGCAACCTTGATGCCG ATGCCCGTGCGGACTTGACCACACGCTACGACGCCTTGTGCGAACATTATGGCATGACGCCGACCCGCAACAACCGCGGC ATCGCACATGAGAATGGCAGCGTCGAAAGCTCCCACGGCCATCTCAAGGCGGCGGTGGAGGATGCGCTGGCGATGCGTGG ATCGACCGACTTCGAGGACCTCGCGGCCTATCGCAGGTTCATCGACGAGATCGTTGCCCGAAAGAACCGGCGCAGTGCCG CCCGCATCGACACCGAAAGGGCAACGCTCAAACCGCTACCTGATCGTCGCACCAGCGACTACGAGGAACATATCCTTCCC GTCACCTCGTCCAGCACCTTCGTTCTGCGCAAGGTGTTCTACACGGTGCCGTCACGGTTGATCGGGCATCGACTGCGTGT GCGCCTCTACGATGATCGGCTCGATCTGTTCCTGGGCGGCAGTTATCTCATGACCCGGCCACGCGGTCGCCCGAAAAGCG CTACCGAACATGGCTATGTGGTGGATTACCGTCACGTGATCCATAGCCTCAGGCGTAAGCCGATGGCCCTGCTGCAGCTG ACCTATCGCGACCAGTTGTTCCCGCGCGAGGCGTACAGGCTCATGTTCGAACGGCTGCTCGAAGCCATGTCCGAGCGTGA CGCTTGCCGTAAGATGGTCGAGTTGCTGTCCATGGCCCATGAACGGGCCTGCGAGGCCGAGCTTGCCGATCTTCTCGCCC AGGACCTTGACGAAGGCCGGCTGCCTGACATCGCCGCGTTGCGAACGCGCTTCTCGCCCGATCCGGCCGCGCTGCCCGAG GTGGTGGTCGAGCTTGGCCCCCTGACCGACTACGATGCCCTGCTGCTGGGAGAGGCCGCATGA Protein sequence : MPGCQVNDHQMRLFMKLRQTNPVPVAAAKAGFSTATGYRIASDPVLPSHRKAPRGRRRPDPLESIFESEIVPMLKAAPGL RAVAIFEEMRRRHPDLDFGVRRTMERRIRAWRAVHGPEQEVIFRQTHEPGRMGLSDFTDMRSLKVTIAGAPLDHLLYHFR LVWSGFEHAHVILGGESYVALAEGLQNALWMLGGAPGEHRSDSLSAAFRNLDADARADLTTRYDALCEHYGMTPTRNNRG IAHENGSVESSHGHLKAAVEDALAMRGSTDFEDLAAYRRFIDEIVARKNRRSAARIDTERATLKPLPDRRTSDYEEHILP VTSSSTFVLRKVFYTVPSRLIGHRLRVRLYDDRLDLFLGGSYLMTRPRGRPKSATEHGYVVDYRHVIHSLRRKPMALLQL TYRDQLFPREAYRLMFERLLEAMSERDACRKMVELLSMAHERACEAELADLLAQDLDEGRLPDIAALRTRFSPDPAALPE VVVELGPLTDYDALLLGEAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL67386.1 | R6-like protein | Not tested | PAI II CFT073 | Protein | 3e-81 | 44 |
| unnamed | AAL67341.1 | R6-like protein | Not tested | PAI II CFT073 | Protein | 3e-81 | 44 |
| r6 | AAC61728.1 | transposase R6 | Not tested | PAI I CFT073 | Protein | 3e-81 | 44 |
| c3607 | NP_755482.1 | hypothetical protein | Not tested | PAI I CFT073 | Protein | 1e-81 | 43 |
| c5144 | NP_756992.1 | hypothetical protein | Not tested | PAI II CFT073 | Protein | 1e-81 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Swit_5071 | YP_001260451.1 | integrase catalytic subunit | VFG1728 | Protein | 6e-82 | 43 |
