Gene Information

Name : Swit_5001 (Swit_5001)
Accession : YP_001260384.1
Strain :
Genome accession: NC_009508
Putative virulence/resistance : Virulence
Product : P-type DNA transfer ATPase VirB11
Function : -
COG functional category : N : Cell motility
COG ID : COG0630
EC number : -
Position : 118324 - 119328 bp
Length : 1005 bp
Strand : -
Note : TIGRFAM: P-type DNA transfer ATPase VirB11; PFAM: type II secretion system protein E

DNA sequence :
ATGAGCGATACCGCCGTCCTGCGCCATTATCTCGCGCCGATCCTGCCGCTGCTGGAGCCGGTCGAGGTGACGGAGCTTGT
CATCAACAAGCCCGGCGAAGTCGGCATCGAAGATCATCGCGGTTGGCATTGGCATAACGTCGCCGAACTCGACAGCGACT
GGCTCGCGACGCTGGCCGTCGCCGCCGCGAGCTTCACCCGGCAGGACGTCAATGCCGAGACCCCGATCTGCTCGACCATT
TTGCCAGGCGGCGAGCGCTGCCAGATCGTCATACCCTCGGTAACCCCGACCGGCGCGCCATCCTTCACGGTGCGCAAGCC
TTCGCGCGTCAATCTCGCGATCGATCAACTCGCGCAAACAGGTTTGTTCGCTGGCACACGCTCGGCCTCCCACGGTCTCG
GCGAGGTCGATGCCCAGCTGGTGGCGCAGCGCGATGCCGCTGACTGGCCGGCGTTCTTCAAGACCGCCGTTGCCGCCCGT
AAGAACATCCTGGTGAGCGGCGCGACCGGCTCGGGCAAGACCACCTTCGCCAAGGCGCTGATCCAACTGATCCCGCCCGA
GGAACGGCTGCTGACGATCGAGGATACGCGCGAGCTCGTCGTCGAGCATCGCAACGTCGTGCACATGGTCTATTCGAGCG
AGCGACAGGGGCTGGCGAAGGTCGGCCCCAAGCAGCTGCTCGAAAGTGCGCTGCGCATGCGGCCCGATCGCATCCTCCTG
CAGGAGCTGCGCGACGGCACCGCCTTCTTTTATCTGCGCAACGTCAACTCGGGGCACCCGGGTTCGATCACAACCGTCCA
TGCCGGCTCGGCGTTGGGCGCGTTCGAGCAGCTGACGTTGCTGGTCAAGGAATCCGAAGGCGGGCGCGATCTGGCCCGCG
ACGACATCCGCGGGCTGTTGCACATGCTCGTCGACGTGGTCGTCCAGACGCGCAAGCGCGCCGGAAAATTCGAAGTCGAG
GAGGTGTATTTTGACCCGCCTGTCGGACGCACGACCGCTCACTAG

Protein sequence :
MSDTAVLRHYLAPILPLLEPVEVTELVINKPGEVGIEDHRGWHWHNVAELDSDWLATLAVAAASFTRQDVNAETPICSTI
LPGGERCQIVIPSVTPTGAPSFTVRKPSRVNLAIDQLAQTGLFAGTRSASHGLGEVDAQLVAQRDAADWPAFFKTAVAAR
KNILVSGATGSGKTTFAKALIQLIPPEERLLTIEDTRELVVEHRNVVHMVYSSERQGLAKVGPKQLLESALRMRPDRILL
QELRDGTAFFYLRNVNSGHPGSITTVHAGSALGAFEQLTLLVKESEGGRDLARDDIRGLLHMLVDVVVQTRKRAGKFEVE
EVYFDPPVGRTTAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vblB11 YP_001610351.1 VblB11 protein Virulence Not named Protein 6e-76 53
virB11 YP_001610007.1 VirB11 protein Virulence Not named Protein 8e-74 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Swit_5001 YP_001260384.1 P-type DNA transfer ATPase VirB11 VFG2240 Protein 3e-74 54
Swit_5001 YP_001260384.1 P-type DNA transfer ATPase VirB11 VFG2218 Protein 3e-47 44
Swit_5001 YP_001260384.1 P-type DNA transfer ATPase VirB11 VFG0024 Protein 7e-44 42