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Name : Tpet_1404 (Tpet_1404) Accession : YP_001244993.1 Strain : Thermotoga petrophila RKU-1 Genome accession: NC_009486 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1394771 - 1396048 bp Length : 1278 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGATAGATATAAAGCTCATCAGACAAAATCCCGATCTCGTGAAAGAAGCCCTCAGAAAACGAGGAGAGGATCCTGCTAC AATCGATGAGATTTTGAAGATCGATGCCGACTGGCGCACTACCATCACGAAAACAAACGAGCTGAGATCCAGAAGAAACG AAATTTCCAAAAATGTGGCAAGGTTGAAAAAAGAAGGGAAAAACACAGAGGCAGAGGCACTCATCGAAGAAGGGAAAAGA TTAGGAGAAGAGATAAAAGCGTTAGAAGAAAAAGAAAAAGAACTTCAGAAGCAGTTGAACGACCTCCTTTTGATGGTCCC GAACATCCCACATGAGAGCGTTCCCGTTGGAGAAGACGAATCCCAGAACGTTGAAGTGAGAAGGTGGGGAGAGCCGAGAG AATTCGATTTCACCCCGCTCGCTCACTGGGACCTCGGACCCGCGTGGGGGCTCATGGATTTCGACAGGGCGACCAAACTC AGCGGTTCCAGATTCACCGTCATGTATGGAAAACTCGCAAGACTCGAGAGAGCTCTGATAAACTTCATGCTTGACGTTCA TACAAAGGAACACGGTTACACGGAAGTGTGGGTCCCACATCTGGTGAAAAGGGAAACCATCACTATAACCGGACAGCTTC CCAAATTCGAAGAAGAGCTTTACCTCGCTGAGAGGGATGACCTGTTCCTCATTCCGACGGCTGAGGTTCCCCTCGCAGCG CTTCACAGTGGAGAGATCCTCGAAGAGAAAGAACTACCGAAGAAATACGTCGCTTACACTCCCTGTTACCGTAGAGAAGC GGGAAGTTACGGGAAAGATGTGAGGGGGATGATCAGACAGCATCAATTCGACAAGGTCGAGCTCGTCTGGGTGACCACAC CGGAAAGATCTTTCGAAGATCTTGAACAGCTTGTGAAAGACGCCGAAACCATTCTTCAAAAACTGGAGCTCCCATACAGA GTCGTTTCGCTCTGTACGGGAGATCTCGGGTTCACCTCCGCAAAAACCTACGATATAGAAGTGTGGCTTCCTTCCTACAA CGCATACAAAGAGATATCTTCCTGCAGTAACGTGACGGACTTTCAGGCAAGAAGAGGAAACATGAGATACAGAAGGAGAT CGGATGGAAAGCTCGAATACGTTCACACGTTGAACGGATCGGGCATTGCCGTTGGAAGGGCACTCGTTGCGATACTGGAA AACTACCAGCAACCAGACGGCAGTGTGAGAGTGCCGGAGGTGCTCGTTCCCTACACAGGGTTCGAGGTGATACCGTAG Protein sequence : MIDIKLIRQNPDLVKEALRKRGEDPATIDEILKIDADWRTTITKTNELRSRRNEISKNVARLKKEGKNTEAEALIEEGKR LGEEIKALEEKEKELQKQLNDLLLMVPNIPHESVPVGEDESQNVEVRRWGEPREFDFTPLAHWDLGPAWGLMDFDRATKL SGSRFTVMYGKLARLERALINFMLDVHTKEHGYTEVWVPHLVKRETITITGQLPKFEEELYLAERDDLFLIPTAEVPLAA LHSGEILEEKELPKKYVAYTPCYRREAGSYGKDVRGMIRQHQFDKVELVWVTTPERSFEDLEQLVKDAETILQKLELPYR VVSLCTGDLGFTSAKTYDIEVWLPSYNAYKEISSCSNVTDFQARRGNMRYRRRSDGKLEYVHTLNGSGIAVGRALVAILE NYQQPDGSVRVPEVLVPYTGFEVIP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-97 | 53 |
