Gene Information

Name : BBta_4907 (BBta_4907)
Accession : YP_001240835.1
Strain : Bradyrhizobium sp. BTAi1
Genome accession: NC_009485
Putative virulence/resistance : Virulence
Product : response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 5147688 - 5149046 bp
Length : 1359 bp
Strand : +
Note : Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic

DNA sequence : 
ATGGCAACCATCCTGATCGTCGATGACGACGCCGCGCTGCGCGACGGTCTCGCGGAGACGGTGACGGATCTCGGTCATCG
CGCCGTGACGGCGGCCTCCGGCCGCGAAGCGATCGGCATGCTGTCGTCCGACACCGATGCCGTGCTGCTCGACCTCCGCA
TGCCCGGGATCGACGGCATCGAGACCCTGCGCCGCATCCGCGCCGGCGGCGACGCGCCGCCGGTGATCGTGCTGACCGCC
TATGCAAGCCCGGAGAACACGATCGAAGCGATGCGGCTCGGCGCCTTCGATCATCTGCTCAAGCCGATCGGCCGGGATGC
GTTGCGTGAGCTGATCGAGCGGCTGCCGCCACGCCGGCGTCAGCGGCGCGACAGCGGCCGGGTTGGCGACAGCGGACTGA
TCGGCACCAGCGAAGCGATGCGCCGGGTGCAGAAGACCATCGGGCTTGCCGCCGATGCCGATGCGACGGTGCTGATCCGC
GGCGAAACCGGCACGGGCAAAGAGCTCGTCGCGCGCGCGCTGCATGTCCACAGCCGCCGCAGCACGGCTCCCTTCGTCGC
CCTCAACTGCGCAGCGATCCCGCAGGATCTGCTCGAAAGCGAACTGTTCGGCCACATCAAGGGCTCGTTCACCGGCGCCG
CCTCGGACCGGTCGGGCGCGTTCCGCGATGCCGGTGCCGGCACGCTGTTCCTCGACGAGATCGGCGACATGCCGCTGTCG
ATGCAGGCGAAGATCCTGCGGGCCCTGCAAGAGCGGATGATCACGCCGGTCGGCGGCAAGCCGATCAAGGTCGCCGCCCG
CGTCGTTGCCGCGACCCATCGCGATCTCGCCAGGCAGGTGGCGAGCGGCGCATTTCGCGAGGATCTCTATTACCGTCTGA
ACGTGATCCCGATCGAGCTGCCGCCGCTCCGCGAACGCACCCAGGACATCCTGCCGCTCGCCGATCATTTTCTGGCGCAG
TGCTCGGACGGCCGGCCGCAACCGCAATTGAGCGATCGCGCCATCGACAAGCTCGTGCATGCGCCTTGGCCGGGCAATGT
GCGCGAGCTGCGCAACGCGATCCAACGCGCCTGCGTGCTGACACGCGGCGCCCTGATCGATGCCGATGACATCGACATCG
GCGCCGTGCCGGCGAACGACGAGGCAGAACCGGCGACGGACTTGCCCGCCGCGGTCGCGCGTCTCGAGGAAGGCATGATC
CGCCGTGCGCTTGCGGCCTGCGGCGGCAACCGCACCGAAGCCGCGCGGCAGCTCAACATCAACCGGCAGCTGCTCTACAC
CAAGATGCAGCGCTACGGCCTCGTCGAGGACGCCACGTCAGGAAATCTGACGTGCGCCGTCGCGAAAGACGACGGCTAG

Protein sequence : 
MATILIVDDDAALRDGLAETVTDLGHRAVTAASGREAIGMLSSDTDAVLLDLRMPGIDGIETLRRIRAGGDAPPVIVLTA
YASPENTIEAMRLGAFDHLLKPIGRDALRELIERLPPRRRQRRDSGRVGDSGLIGTSEAMRRVQKTIGLAADADATVLIR
GETGTGKELVARALHVHSRRSTAPFVALNCAAIPQDLLESELFGHIKGSFTGAASDRSGAFRDAGAGTLFLDEIGDMPLS
MQAKILRALQERMITPVGGKPIKVAARVVAATHRDLARQVASGAFREDLYYRLNVIPIELPPLRERTQDILPLADHFLAQ
CSDGRPQPQLSDRAIDKLVHAPWPGNVRELRNAIQRACVLTRGALIDADDIDIGAVPANDEAEPATDLPAAVARLEEGMI
RRALAACGGNRTEAARQLNINRQLLYTKMQRYGLVEDATSGNLTCAVAKDDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-60 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-60 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BBta_4907 YP_001240835.1 response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator BAC0467 Protein 2e-76 45
BBta_4907 YP_001240835.1 response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator BAC0089 Protein 2e-66 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BBta_4907 YP_001240835.1 response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator VFG1249 Protein 3e-64 47