|
Name : BBta_3778 (BBta_3778) Accession : YP_001239761.1 Strain : Bradyrhizobium sp. BTAi1 Genome accession: NC_009485 Putative virulence/resistance : Resistance Product : tetracycline-efflux transporter Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 3956720 - 3957988 bp Length : 1269 bp Strand : + Note : Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 5 : Inner membrane protein DNA sequence : ATGGTCGACACCGAGCTGGCGAGTTCCGACGGCGTACCGTCGCCGCAGGCCCCGCGCCGCGGCGCCGTCGCTTTCATCTT CGTCACCATCCTGCTCGATATGCTCGCGCTCGGGCTGATCATGCCGATCCTGCCCAAGCTGATCGAGAGCTTCGTCGCCA ATGACACCGCGCAGGCAGCACGGATCTTCGGCCTGTTCGGCACGGCCTGGGCACTGATGCAGTTCGTGTTCTCGCCGGTG CTCGGCAGCCTCTCCGACCGGTTCGGCCGGCGGCCGGTCATCCTGCTCTCGAACTTCGGCCTCGCCGCGGACTACGTGCT GATGGCGATGGCGCCGTCGCTGGCGTGGCTGTTCATTGGCCGGCTGATCTCCGGCATCACCTCGGCCAGCATTTCCACGG CCTTTGCCTACATCGCCGACCTCACGCCGCCAGAGCGGCGCGCCGCGATCTTCGGCCGCATGGGAGCGGCGTTCGGCGCC GGCTTCGTGCTCGGCCCGGCGACCGGCGGATTGCTGGGCGATATCGATCCGCGGCTGCCGTTCTGGGCGGCCGCCGGACT CAGCTTCGTCAATGCGGTCTATGGATTGTTGGTGCTGCCGGAATCGCTGGGGCACGAGCGGCGCAGTCCGTTCCGCTGGC GGACCGCGAACCCGCTCGGCGCACTGCAATTGCTGCGCTCCGACCGCATGCTGGCCGGGCTGTCCATGGTCAACTTCATC ACCCAGCTCGCCCATGTCGTGCTGCCGTCGACCTTCGTGCTCTACGCCACCTACCGCTATGGCTGGGATACGCGCACGGT CGGCCTGACGCTGGCGATCGTCGGCGTGTGCGCCATGGTGGTGCAGGGCGGGGCGGTCGGCTGGATCGTGCGTTCGCTCG GCGAGCGTGGCGCCTTGCTGCTCGGCCTGTGCAGCGGCACGCTGGGCTTTCTGATCTTTGGCCTCGCGCCGACCGGGATG CTGAGCTGGCTCGGCATTCCTGCGATGGCGCTCTGGGGCGTCTCCGGCGCGGCGATCCAGGCGCTGATGACACGGCTGGT GCCGGCGGACCGGCAGGGCCAGCTGCAGGGCGCGACGTCGAGCGTGCAGAGCATGGCCCAGCTCGCCGGGCCGTTCCTGT TCACGCTGACCTTCGCCTATTTCATCGGAGTCACCGCGCCGGTGCATCTGCCCGGCGCGCCGTTCCTGCTGGCGTCGATG CTGTTGGTCGTCGCGCTCGCGATCGCGCTGCGGACGATCCGCGCCGCGACAGCCGCAGCCTTATCCTGA Protein sequence : MVDTELASSDGVPSPQAPRRGAVAFIFVTILLDMLALGLIMPILPKLIESFVANDTAQAARIFGLFGTAWALMQFVFSPV LGSLSDRFGRRPVILLSNFGLAADYVLMAMAPSLAWLFIGRLISGITSASISTAFAYIADLTPPERRAAIFGRMGAAFGA GFVLGPATGGLLGDIDPRLPFWAAAGLSFVNAVYGLLVLPESLGHERRSPFRWRTANPLGALQLLRSDRMLAGLSMVNFI TQLAHVVLPSTFVLYATYRYGWDTRTVGLTLAIVGVCAMVVQGGAVGWIVRSLGERGALLLGLCSGTLGFLIFGLAPTGM LSWLGIPAMALWGVSGAAIQALMTRLVPADRQGQLQGATSSVQSMAQLAGPFLFTLTFAYFIGVTAPVHLPGAPFLLASM LLVVALAIALRTIRAATAAALS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 2e-36 | 43 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 2e-36 | 43 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 2e-36 | 43 |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 3e-36 | 43 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 3e-37 | 42 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 4e-37 | 42 |
| tet(G) | AAK02051.1 | tetracycline resistance protein | Not tested | SGI1 | Protein | 1e-29 | 41 |
| tetA(G) | ABZ01843.1 | TetA(G) | Not tested | SGI2 | Protein | 1e-29 | 41 |
| tetA(G) | AGK06974.1 | TetA(G) | Not tested | SGI1 | Protein | 1e-29 | 41 |
| tetA(G) | AGK07104.1 | TetA(G) | Not tested | SGI1 | Protein | 1e-29 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| BBta_3778 | YP_001239761.1 | tetracycline-efflux transporter | AY264780.2.gene3.p01 | Protein | 4e-39 | 43 |
| BBta_3778 | YP_001239761.1 | tetracycline-efflux transporter | NC_011586.7045189.p0 | Protein | 2e-33 | 42 |
| BBta_3778 | YP_001239761.1 | tetracycline-efflux transporter | X75761.gene.p01 | Protein | 5e-36 | 42 |
| BBta_3778 | YP_001239761.1 | tetracycline-efflux transporter | AF534183.gene.p01 | Protein | 2e-37 | 42 |
| BBta_3778 | YP_001239761.1 | tetracycline-efflux transporter | NC_010410.6002597.p0 | Protein | 2e-37 | 42 |
| BBta_3778 | YP_001239761.1 | tetracycline-efflux transporter | CP001485.1.gene2821. | Protein | 2e-37 | 42 |
