|
Name : clpB (BBta_1195) Accession : YP_001237345.1 Strain : Bradyrhizobium sp. BTAi1 Genome accession: NC_009485 Putative virulence/resistance : Virulence Product : chaperone Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1268066 - 1270705 bp Length : 2640 bp Strand : + Note : Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic DNA sequence : ATGAATATCGAAAAATATACCGAGCGCGCGCGGGGCTTCATCCAATCGGCGCAATCGCTGGCGGTGCGCGACGGCCATCA GCAGTTCTCGCCGCTGCATCTCCTCAAGGTGCTCCTCGACGACAGCGAAGGACTCGCGGGCGGTCTGATCGATCGCGCCG GCGGCAATTCGCGCGCCATTCTGAAGGCCACTGAGGATGCGCTGGGCAAGCTGCCGAAAGTGTCGGGCAGCGGCGCCGGG CAGATCTATCTGTCGCCCGAGCTGGCGCGCGGCTTCGACGCGGCGGAGAAGGCGGCCGAGAAGGCCGGCGACAGTTTCGT CACCGTCGAGCGGCTGCTGCTCGGCCTGACGCTGGACAAGAACAGCGAGACCGGCAGCATCCTCGCCAAGGGCGGCGTCA CCGCGCAGAACCTCAACGCGGCGATCGAGAGCTTGCGCAAGGGGCGCACGGCCGATTCGGCGACCGCCGAGAACGCTTAT GATGCGCTGAAGAAATATGCCCGCGACCTGACCCAGGCGGCGCGCGACGGCAAGCTCGATCCGGTGATCGGCCGCGACGA GGAGATCCGCCGCACCATCCAGGTGCTGTCGCGGCGGACCAAGAACAATCCCGTGCTGATCGGCGAGCCCGGCGTCGGCA AGACCGCGATCGTCGAGGGGCTGGCGCTGCGCATCGTCAATGGCGACGTGCCGGAGAGTCTAAAGGACAAGCGGCTCTTA TCACTCGATTTGGGCGCGCTGATCGCCGGTGCCAAATATCGCGGCGAGTTCGAGGAGCGGCTGAAGGCCGTGCTGCAGGA GGTCACGGCCGCCGAAGGCACCTTCGTGCTGTTCATCGACGAGATGCACACCCTGATCGGCGCCGGCAAGGCCGATGGCG CCATGGATGCGTCGAACCTGTTGAAGCCCGCGCTCGCGCGCGGCGAGCTGCATTGCATCGGCGCGACCACGCTCGACGAG TATCAGAAGCATGTCGAGAAGGACGCCGCGCTCGCCCGCCGCTTCCAGCCGGTCTATGTCACCGAGCCCACGGTCGAGGA CACGATCTCGATCCTGCGCGGCCTGAAGGACAAATACGAGCAGCATCACGGCGTGCGCATCACCGACTCCGCGCTGGTCG CCTCGGCCACGCTGTCAAACCGCTACATCACCGACCGCTTCCTCCCCGACAAGGCCATCGACCTGATGGACGAGGCGGCG GCGCGGCTGAAGATGCAGGTCGATAGCAAGCCCGAGGAGCTGGACTCGCTGGACCGCGAGATCATCCGACTCAAGATCGA GCAGGAGGCCTTGAAGAAGGAGAGCGATCTCGGCTCCAAGACCCGGCTGCAGGCGCTGGAGAAGGAGCTCGCCGATCTCG AGGAGAAGTCGGCCTCGCTGACCGCGAAATGGAGCGCCGAGAAGGACAAGCTGTCGAACGCGCAGAAGCTCAAGAGTGAG CTGGACGCGCTCCGCATCGAGCTCGCCAATGCGCAGCGCCGCGGCGAGTACCAGAAGGCGGGCGAGCTGGCCTATGGCCG GATCCCCGAGCTGGAGAAGCGGCTGGCTGACATCGAGGCCAAGGAGAATGCCGGCGAGATGATGGAGGAGGCGGTCACCG CCAACCACATCGCGCAGGTGGTCTCGCGCTGGACCGGCGTGCCGGTCGACAAGATGCTCGAGGGCGAGAAGGACAAGCTG CTGCGGATGGAGGACAGCCTCGGCAAGCGCGTCGTCGGCCAGTTCGAGGCCGTGCATGCGGTTGCGACCGCCGTGCGGCG CTCGCGCGCCGGCCTGCAGGACCCGCACCGGCCGATGGGCTCGTTCATGTTCTTAGGCCCGACCGGCGTCGGCAAGACCG AGCTGACCAAGGCGCTCGCCGAATATCTGTTCAACGACGAGACCGCGATGGTCCGCCTGGACATGTCCGAGTACATGGAG AAGCACTCGGTGTCGCGGCTGATCGGCGCGCCTCCCGGCTATGTCGGCTATGACGAGGGCGGGGCGCTGACCGAAGCGGT GCGGCGCCGGCCGTACCAGGTCGTGCTGTTCGACGAGATCGAGAAGGCGCATCCGGACGTGTTCAACGTGCTTTTGCAGG TGCTCGACGACGGCCGCCTGACCGATGGCCAGGGCCGCACCGTCGACTTCCGCAACACGCTGATCATCATGACCAGCAAT CTCGGCTCCGAGTTCCTGGTCAACCAGCCGGAGGGCGAGGATACGTCCGAGGTGCGCGAGCTGGTGATGGGCACGGTGCG GAGCCATTTCCGGCCCGAGTTCCTGAATCGTGTGGACGAGATCATCCTGTTCCATCGCCTGCAGAAGAGCGAGATGGGCC GGATCGTCGAGATCCAGTTCTCGCGGCTCCAGAAGCTGCTGGAGGAGCGCAAGATCACGCTGTCGCTGGATGGCGATGCG CGCGATTGGCTCGCTGCCAAGGGCTGGGACCCGGCCTATGGGGCGCGTCCGCTGAAGCGGGTGATCCAGCGCAGCGTGCA GGATCCGCTCGCCGAGATGATCCTCGCCGGCGACATCAAGGATGGCGACAAGGTCGCGATCTCCTCGGAGGGTAACGTGC TGACCTTCAACGGCAAGGCGCATCGCACCGCCGAGATCGCGACCTTCGAGGCGCCGATCCCGAAGCGCAAGCTGAACTGA Protein sequence : MNIEKYTERARGFIQSAQSLAVRDGHQQFSPLHLLKVLLDDSEGLAGGLIDRAGGNSRAILKATEDALGKLPKVSGSGAG QIYLSPELARGFDAAEKAAEKAGDSFVTVERLLLGLTLDKNSETGSILAKGGVTAQNLNAAIESLRKGRTADSATAENAY DALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRIVNGDVPESLKDKRLL SLDLGALIAGAKYRGEFEERLKAVLQEVTAAEGTFVLFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDE YQKHVEKDAALARRFQPVYVTEPTVEDTISILRGLKDKYEQHHGVRITDSALVASATLSNRYITDRFLPDKAIDLMDEAA ARLKMQVDSKPEELDSLDREIIRLKIEQEALKKESDLGSKTRLQALEKELADLEEKSASLTAKWSAEKDKLSNAQKLKSE LDALRIELANAQRRGEYQKAGELAYGRIPELEKRLADIEAKENAGEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEKDKL LRMEDSLGKRVVGQFEAVHAVATAVRRSRAGLQDPHRPMGSFMFLGPTGVGKTELTKALAEYLFNDETAMVRLDMSEYME KHSVSRLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSN LGSEFLVNQPEGEDTSEVRELVMGTVRSHFRPEFLNRVDEIILFHRLQKSEMGRIVEIQFSRLQKLLEERKITLSLDGDA RDWLAAKGWDPAYGARPLKRVIQRSVQDPLAEMILAGDIKDGDKVAISSEGNVLTFNGKAHRTAEIATFEAPIPKRKLN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 4e-104 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_001237345.1 | chaperone | VFG2076 | Protein | 3e-117 | 43 |
| clpB | YP_001237345.1 | chaperone | VFG2084 | Protein | 2e-111 | 43 |
