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Name : smpB (Acry_1907) Accession : YP_001235027.1 Strain : Acidiphilium cryptum JF-5 Genome accession: NC_009484 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 2104939 - 2105418 bp Length : 480 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCCGAGCCCCGGAAATCCGGGCTGATCTCCCACGGGATCGCGGCGCAGAACCGCAAGGCCCGGTTCAACTACACGAT CAAGGACACGGTCGAGGCGGGCATCGTCCTGCGCGGCGCCGAGGTGAAGTCGCTGCGCATGGGCCGCGCCACGCTGTCCG AGGCCTTCGCCGGCGAGCGCGACGGCGAGATGTATCTCTTCAACATGTACATCCCCGAATACCAGGGCGGCGTGCTCTCC CGCTTCGACACCAAGGGCCCGCGCAAGCTGCTGCTCAAGCGCAAGCAGATCGACCAGCTCCTCGGCGCCATCGCCCGCCA GGGCTCGACCGTCGTCCCGCTCGACGTGCATTTCAACCCGCGCGGCCTCGCCAAGGTCACGCTCGGCATCGCCGAGGGCC GCAAGCAGCACGACAAGCGCCAGGCCATCGCCAAGCGCGACTGGGAACGCGACAAGGCCCGCATCCTCAAGAACCGCTGA Protein sequence : MAEPRKSGLISHGIAAQNRKARFNYTIKDTVEAGIVLRGAEVKSLRMGRATLSEAFAGERDGEMYLFNMYIPEYQGGVLS RFDTKGPRKLLLKRKQIDQLLGAIARQGSTVVPLDVHFNPRGLAKVTLGIAEGRKQHDKRQAIAKRDWERDKARILKNR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 5e-24 | 47 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 4e-20 | 43 |
