Gene Information

Name : phoB (SynRCC307_0779)
Accession : YP_001227035.1
Strain : Synechococcus sp. RCC307
Genome accession: NC_009482
Putative virulence/resistance : Virulence
Product : two-component system response regulator, phosphate sensing PhoB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 709470 - 710195 bp
Length : 726 bp
Strand : -
Note : Signal transduction mechanisms

DNA sequence : 
GTGGCCGTCAGCCCTCCGCCCCAGGCACCACCAACACGACTCTTGGTCGTTGAAGACGACGACACGATTCGCGAAACCAT
TGCCGAGGCCCTCAGCAGCGAAGGCTTTGAAGTTGATGCCGTTGGCAGCGGCAGCACAGCACTGGAGCGTTTCAAGGGGT
CTCCGGATAACCCCTCCTGTGATTTGGTCTTACTGGACCTGATGCTTCCTGGCGTCAGCGGCCTGGATGTCTGCCGCTAC
ATGCGCCGCCGCGGCTTTTCAACGCCGATCATCGTCGTGAGCGCCCGCGACAGCGAAACCGATCGGGTGGTGGGCCTGGA
GATTGGGGCCGACGACTACTTGGTGAAGCCCTTTGGCATGCGCGAGCTCGTAGCCCGCTGCCGCGCGCTGCTGCGCCGCA
GCGCCCGCAATGGCGATAGCGGCGCCAAAGAAGTGCTGCGTTTCGATGAGATCACGCTCTACCCCGAGGAGTGCCGCGTC
ACCCGCGGCGGCCAAGAGGTGAACCTCTCCCCCAAGGAATACCGCCTGCTGGAGGTATTCATGCAAAGCCCCAAACGGGT
TTGGAGCCGCGACAAGTTGCTGGAGCGTGTCTGGGGCATCGACTTCATGGGCGACAGCAAGACCGTTGATGTCCACATCC
GCTGGCTGCGCGAGAAGTTGGAGACCAACCCCAGTGCGCCCACCTACATCCTCACCGTGCGCGGGTTTGGCTATCGCTTC
GGATGA

Protein sequence : 
MAVSPPPQAPPTRLLVVEDDDTIRETIAEALSSEGFEVDAVGSGSTALERFKGSPDNPSCDLVLLDLMLPGVSGLDVCRY
MRRRGFSTPIIVVSARDSETDRVVGLEIGADDYLVKPFGMRELVARCRALLRRSARNGDSGAKEVLRFDEITLYPEECRV
TRGGQEVNLSPKEYRLLEVFMQSPKRVWSRDKLLERVWGIDFMGDSKTVDVHIRWLREKLETNPSAPTYILTVRGFGYRF
G

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-28 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 5e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_001227035.1 two-component system response regulator, phosphate sensing PhoB NC_012469.1.7686381. Protein 2e-39 42
phoB YP_001227035.1 two-component system response regulator, phosphate sensing PhoB HE999704.1.gene1528. Protein 1e-31 41
phoB YP_001227035.1 two-component system response regulator, phosphate sensing PhoB AE000516.2.gene3505. Protein 3e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
phoB YP_001227035.1 two-component system response regulator, phosphate sensing PhoB VFG1390 Protein 7e-35 43
phoB YP_001227035.1 two-component system response regulator, phosphate sensing PhoB VFG1563 Protein 2e-28 41
phoB YP_001227035.1 two-component system response regulator, phosphate sensing PhoB VFG1702 Protein 2e-28 41