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Name : lysS (SynWH7803_0177) Accession : YP_001223900.1 Strain : Synechococcus sp. WH 7803 Genome accession: NC_009481 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 194732 - 196201 bp Length : 1470 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : GTGTCCGATCTGCGTGAGACCCGCCTCGAGAAGGTGTCAGCCCTGCGCGACCAGGGCCGGGAGCCCTACGCCCTCACCTT TGACCCCAGCGACCGGATGGCTCGGTTGCAGAGCGACCATGCCGATCTGCCCAAGGGTGAGGAGCGGGATTGTGCGGTGG CTGTGGCCGGGCGGGTGATGACCCGGCGGGTGATGGGCAAGCTTGCGTTCTTCACCCTGGCCGATGAAACCGGCACGATC CAGCTGTTTCTGGAGAAGGCGGCACTCGGCGAGGCCTTCGCTCAGATTACGTCTCTGGTCGATGCCGGTGATCTGATCGG CGTGCGTGGCACGTTGCGCCGCACCGACCGGGGGGAGTTGTCGGTGAAAGTGGCGGAGTGGACCATGCTCACCAAGTCTC TGCAGCCCCTGCCGGACAAGTGGCACGGGCTGGCGGACGTGGAGAAGCGCTATCGCCAGCGCTATCTCGATCTGATCGTG ACCCCGCAGTCGCGCGAGACGTTCCGACGCCGGGCGCTGACCGTGAGTGCGATCCGTCGCTGGCTCGATGAGCGCGAGTT CCTCGAGATTGAAACGCCCGTGCTGCAGTCGGAGGCAGGAGGAGCCGATGCGCGTCCGTTCATCACCCACCACAACACGT TGGATCTCCCGCTCTACCTGCGCATCGCCACCGAATTGCACCTCAAACGCTTGGTGGTGGGCGGTTTTGAGCGGGTCTAC GAGCTGGGTCGCATCTTCCGCAACGAGGGGGTGAGCACCCGCCACAACCCTGAGTTCACCTCGGTGGAGGTGTATCAGGC CTATGCCGATTACCTGGGGATGATCGAGCTCACCGAGTCGATGATCGCCTCGGTGTGCGAGCAGGTGTGCGGCGGCACGC GGCTCACCTACCAAGGCACGGAGATCGATCTCACCCCGCCCTGGCGCCGGGCGACGATGCACGAGCTGGTGGAGGAAGCC ACCGGCCTCGACTTCACGGCTTTCGCGGATCGGGCGGCGGCCGCTGAAGCGATGACGGCCAAGGGGTTGCCGGTGCCAGA CAAAGCCGATTCGGTGGGCCGTCTGCTCAATGAGGCTTTTGAGCATGCCGTGGAAGCCAATCTGATCCAGCCCACCTTCG TGCTCGACTATCCCGAGGAGATCTCTCCGCTCGCCCGCAAGCACCGCAGCAAGCCTGGCTTGGTGGAGCGCTTCGAGTTG TTCATCGTTGGTCGGGAAACGGCCAATGCCTTCAGCGAGTTGATCGATCCAGTGGACCAGCGCGGGCGCCTAGAGGCTCA GCAGGCACGCCGGGCCGCCGGTGATGAGGAAGCCCAGGGGGTGGATGAGGACTTTCTGCAGGCCCTGGAAGTGGGCATGC CCCCCACTGGAGGCCTGGGCATCGGCATCGACCGCCTGGTGATGCTGCTCACGGACAGTCCCTCCATCCGCGATGTGATC GCCTTCCCGCTGCTGCGTCCTGAGGGCTGA Protein sequence : MSDLRETRLEKVSALRDQGREPYALTFDPSDRMARLQSDHADLPKGEERDCAVAVAGRVMTRRVMGKLAFFTLADETGTI QLFLEKAALGEAFAQITSLVDAGDLIGVRGTLRRTDRGELSVKVAEWTMLTKSLQPLPDKWHGLADVEKRYRQRYLDLIV TPQSRETFRRRALTVSAIRRWLDEREFLEIETPVLQSEAGGADARPFITHHNTLDLPLYLRIATELHLKRLVVGGFERVY ELGRIFRNEGVSTRHNPEFTSVEVYQAYADYLGMIELTESMIASVCEQVCGGTRLTYQGTEIDLTPPWRRATMHELVEEA TGLDFTAFADRAAAAEAMTAKGLPVPDKADSVGRLLNEAFEHAVEANLIQPTFVLDYPEEISPLARKHRSKPGLVERFEL FIVGRETANAFSELIDPVDQRGRLEAQQARRAAGDEEAQGVDEDFLQALEVGMPPTGGLGIGIDRLVMLLTDSPSIRDVI AFPLLRPEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-103 | 48 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-84 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001223900.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-103 | 48 |
