Gene Information

Name : SynWH7803_0980 (SynWH7803_0980)
Accession : YP_001224703.1
Strain : Synechococcus sp. WH 7803
Genome accession: NC_009481
Putative virulence/resistance : Virulence
Product : ABC-type Mn2+ transport system permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 904635 - 905471 bp
Length : 837 bp
Strand : +
Note : -

DNA sequence : 
ATGGATCTTCTCCTGGAACCCCTCAGCCACGCCTTCATGCTCAAGGCGCTGTTGATCAGCGCCCTGGTGTGGGGGGTTTG
CGGTCTGCTCTCCTGCTACATGACCCTCAAGGGCTGGGCTCTGATGGGTGATGCCGTCTCCCATGCGGTGCTGCCGGGAG
TGGTGCTGGCCTATGCCCTGGGGCTTCCCTTCTCGCTCGGTGCCTTCGTGTTCGGCGTGGGGTCGGTGGCCACCATCGGC
TTTGTGAAGCAGAAGTCGCGGATCAAGGAAGACACGGTGATCGGCTTGGTGTTCACGGGCTTCTTCGCCCTGGGACTGGT
GCTGGTGTCGAAGACGCGCAGCAACATCGACCTAACCCACATCCTCTTCGGCAATGTGCTGGGGATCTCCTCCGCCGACA
TCCTCCAGACCGTGCTGATCTCCAGTGTGGTGATCCTGCTGCTGCTGCTGTTCCGCAGGGATCTGCTGCTCTTCTGTTTC
GATCCCACCCATGCCCGTTCGATCGGGATCAACACGGGCGCTCTGCACTACCTGCTTCTCTCGGTGCTGTCGTTGGCGGC
GGTGGCGGGATTGCAAACGGTGGGCATCATTCTTGTGGTGGCCATGCTTGTCACCCCTGGTGCCACGGCCTACTTGCTCA
CCGATCGCTTTGACCGCATGACCTGGCTGGCGATCGGCAGCAGTGTGCTCTCCAGTGTGCTGGGGGTTTATGTGAGCTAC
TGGACCGACAGCTCCACGGCGGGATGCATCGTTCTCGTGCAAACCGGACTTTTCCTGTTGGCGTTTCTTCTGGCACCGCG
CCATGGCGTGCTGCGCCGCGGAAACCCTCAGGCCTGA

Protein sequence : 
MDLLLEPLSHAFMLKALLISALVWGVCGLLSCYMTLKGWALMGDAVSHAVLPGVVLAYALGLPFSLGAFVFGVGSVATIG
FVKQKSRIKEDTVIGLVFTGFFALGLVLVSKTRSNIDLTHILFGNVLGISSADILQTVLISSVVILLLLLFRRDLLLFCF
DPTHARSIGINTGALHYLLLSVLSLAAVAGLQTVGIILVVAMLVTPGATAYLLTDRFDRMTWLAIGSSVLSSVLGVYVSY
WTDSSTAGCIVLVQTGLFLLAFLLAPRHGVLRRGNPQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 9e-43 50
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-42 50
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-42 50
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-42 50
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-42 50
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-37 48
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-37 48
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-37 48
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-37 48
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-37 48
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 4e-35 42
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 3e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SynWH7803_0980 YP_001224703.1 ABC-type Mn2+ transport system permease BAC0351 Protein 5e-43 50
SynWH7803_0980 YP_001224703.1 ABC-type Mn2+ transport system permease BAC0441 Protein 3e-42 49
SynWH7803_0980 YP_001224703.1 ABC-type Mn2+ transport system permease BAC0352 Protein 2e-37 48
SynWH7803_0980 YP_001224703.1 ABC-type Mn2+ transport system permease BAC0442 Protein 9e-42 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SynWH7803_0980 YP_001224703.1 ABC-type Mn2+ transport system permease VFG0527 Protein 5e-43 50
SynWH7803_0980 YP_001224703.1 ABC-type Mn2+ transport system permease VFG0528 Protein 2e-37 48