Gene Information

Name : SynWH7803_0978 (SynWH7803_0978)
Accession : YP_001224701.1
Strain : Synechococcus sp. WH 7803
Genome accession: NC_009481
Putative virulence/resistance : Virulence
Product : ABC-type Mn2+ transport system periplasmic protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 902916 - 903878 bp
Length : 963 bp
Strand : +
Note : -

DNA sequence : 
TTGCCGAGTCGCGTTCTGCGTAGCGCCCTGATGCGTTGCACCATCGTGTCTTCTCTGATCGGTTGTTGCCTGCTGGCAGC
CTGTGCAACGCCTCGTGAGCCGCAACGATCTCTGAAGGACCCGGATCAGCGCCCCAGGGTTCTGGCCACCTTCACTGTGC
TGGCTGATCTGGCCAGAAACGTGGCGGGTGATCGCTTGAAAGTGGAATCCATCACCAAGCCCGGCGCAGAGATCCATGGC
TACGAGTTCACGCCCAGCGATATCGAACGGGCGTCTGGCGCTGATCTGATTGTGGAGAACGGCTTGGGGCTTGAGCTCTG
GGCGCGCCGCTTCACGGCCGCGGCCGGCGATGTTCCCTCAGTCACGCTCACGGAAGGGATTCAGCCGCTCTTGATCGAGG
ACGATGCCTATGCCGGCCGTCCCAATCCCCATGCCTGGATGTCGCCGCAGCGCACCGAGCACTACGTGGATCAACTTGTG
AAAGCCTTTTCCTCCCTTGATCCAGACGGTGCGCCGACCTACCGGGCCAATGGCGAGGCGTACAAGCTCAAACTCCAAAA
GCTTGATGGCGAACTGCGGCAAGCCCTGCAATCACTTCCGAAGCAACAGCGCCTGCTGGTGACCTGTGAGGGGGCCTTGA
GTTACCTGGCACGCGATTACGGGCTGGAGGAGGCCTATCTGTGGCCGGTGAATGCTGAAAGTCAGATCACGCCTCGCCGC
ATGGCCCGGCTGATTGAACGGGTCAAGCGTGACCAGGTTCCGGCGGTGTTCTGTGAGACCACGGTGAGTGATCGGGCCCA
ACGGGAGGTGGCCCGTGCCGCTGGCAGTCGCTTTGGCGGCAGTTTTTACGTGGATTCCTTATCGGATCGCAACGGTCCTG
CCTCCTCCCTCCTCGATCTGCAGCGCTACAATGTGAAACTCATCCGAGAAGGGCTGGGGACATCCGCCGATCCAACGCCA
TGA

Protein sequence : 
MPSRVLRSALMRCTIVSSLIGCCLLAACATPREPQRSLKDPDQRPRVLATFTVLADLARNVAGDRLKVESITKPGAEIHG
YEFTPSDIERASGADLIVENGLGLELWARRFTAAAGDVPSVTLTEGIQPLLIEDDAYAGRPNPHAWMSPQRTEHYVDQLV
KAFSSLDPDGAPTYRANGEAYKLKLQKLDGELRQALQSLPKQQRLLVTCEGALSYLARDYGLEEAYLWPVNAESQITPRR
MARLIERVKRDQVPAVFCETTVSDRAQREVARAAGSRFGGSFYVDSLSDRNGPASSLLDLQRYNVKLIREGLGTSADPTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-66 48
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-66 48
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-66 48
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-66 48
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-66 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SynWH7803_0978 YP_001224701.1 ABC-type Mn2+ transport system periplasmic protein BAC0349 Protein 7e-67 48
SynWH7803_0978 YP_001224701.1 ABC-type Mn2+ transport system periplasmic protein BAC0439 Protein 1e-63 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SynWH7803_0978 YP_001224701.1 ABC-type Mn2+ transport system periplasmic protein VFG0525 Protein 6e-67 48