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Name : clpC (CMM_0857) Accession : YP_001221597.1 Strain : Clavibacter michiganensis NCPPB 382 Genome accession: NC_009480 Putative virulence/resistance : Virulence Product : ATP-dependent protease, ATPase subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 976162 - 978672 bp Length : 2511 bp Strand : + Note : ATP-dependent protease, ATPase subunit (NP_627581.1| putative Clp-family ATP-binding protease [Streptomyces coelicolor A3(2)]; NP_959395.1| ClpC [Mycobacterium avium subsp. paratuberculosis str. k10]). pfam02861, Clp_N, Clp amino terminal domain (twice). DNA sequence : ATGTTCGAGAGATTCACCGACCGCGCTCGTCGCGTCGTCGTCCTGGCCCAAGAAGAGGCCAAGATGCTCAACCACAACTA CATCGGGACCGAGCACATCCTGCTCGGCCTCATCCACGAGGGCGAAGGCGTGGCCGCCAAGGCCCTGGAGTCGCTCGGCA TCTCCCTCGATGCCGTCCGTGAACAGGTCCAGGACATCATCGGCCAGGGCCAGCAGCAGCCCACGGGGCACATCCCGTTC ACGCCGCGCGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTCCAGCTCGGCCACAACTACATCGGCACCGAGCA CATCCTCCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCGCAGGTGCTCGTCAAGCTCGGCGCCGACCTCAACCGCG TGCGCCAGCAGGTCATCCAGCTCCTGTCCGGCTACCAGGGCAAGGAGGCGGTCGCCGTCGGCGGCGAGGCCCAGCAGAGC CAGCAGGCGGGCTCCACGGTCCTCGACCAGTTCGGGCGCAACCTCACGCAGGCCGCGCGCGACGGCAAGCTCGACCCCGT CATCGGGCGCGAGAAGGAGATCGAGCGCGTGATGCAGATCCTGTCGCGCCGCTCCAAGAACAACCCCGTCCTCATCGGCG AGCCCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTGGCGCAGGCCATCGTCAAGGGCGACGTCCCGGAGACGCTGAAG GACAAGCAGCTCTACACGCTCGACCTCGGCTCGCTCATCGCCGGTTCCCGCTACCGCGGCGACTTCGAGGAGCGCCTCAA GAAGGTCACCAAGGAGATCCGCACGCGCGGGGACATCATCACCTTCATCGACGAGATCCACACCCTCGTCGGCGCGGGTG CCGCCGAGGGCGCGATCGACGCGGCCAGCATCCTCAAGCCGCTCCTCGCGCGCGGCGAGCTGCAGACCATCGGCGCCACC ACGCTCGACGAGTACCGCAAGCACTTCGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCCATCCAGGTGCAGGAGCC CTCGCTGCCCCACACCATCAACATCCTCAAGGGCCTGCGCGACCGGTACGAGGCGTTCCACAAGGTGTCCATCACCGACG GCGCCATCGTGTCCGCGGCGAACCTCGCGGACCGCTACATCGCCGACCGGTTCCTCCCGGACAAGGCCATCGACCTGATC GACGAGGCCGGCGCCCGCCTGCGCCTCTCGATCCTGTCGGCGCCGCCGGAGCTGCGCGAGTTCGACGAGCGCATCTCCAC GGTCCGCGTGGCCAAGGAGACCGCCATCGAGGACCAGGACTTCGAGAAGGCCGCGAGCCTGCGCGACGAGGAGAAGAACC TCCTCGGCGAGCGCCTCCGCCTCGAGAAGCAGTGGCGCTCGGGCGACGTCCGCACCACCGCAGAGGTCGACGAGGGCCTG ATCGCCGAGGTGCTGGCGCAGGCCACGGGCATCCCGGTCTTCAAGCTCACGGAGGAGGAGTCCTCGCGCCTCGTCTTCAT GGAGAAGGCCCTGCACCAGCGGGTCATCGGCCAGGAGGAGGCCATCTCGGCCCTGTCCAAGACCATCCGCCGCACCCGCG CCGGACTCAAGGACCCGCGCCGTCCCTCGGGATCGTTCATCTTCGCCGGCCCCACGGGCGTCGGCAAGACGGAGCTCGCG AAGGCCCTGGCGGAGTTCCTGTTCGACGACGAGGACGCCCTCATCTCGCTCGACATGAGCGAGTACGGCGAGAAGCACAC TGTGAGCCGCCTCTTCGGCGCCCCTCCCGGATTCGTCGGCTTCGAGGAGGGCGGGCAGCTCACCGAGAAGGTGCGCCGCA AGCCGTTCTCCGTGGTGCTCTTCGACGAGATCGAGAAGGCCCACCCGGACATCTTCAACTCGCTCCTCCAGATCCTGGAG GAGGGACGCCTGACGGATGGCCAGGGCCGCGTGGTCGACTTCAAGAACACGGTCATCATCATGACCACCAACCTCGGCAC CAAGGACATCACGGGTGCCCCGGTCGGGTTCCAGGTCGAGAACAACGCCGCGAACTCGTACGAGCGCATGAAGGGCAAGG TCAGCGAGGAGCTGAAGAAGAACTTCAAGCCCGAGTTCCTCAACCGCGTGGACGACACCATCGTCTTCCCGCAGCTGTCG AAGCCCGAGCTGCTCCAGATCGTCGACCTGTTCGTGAAGCGACTGTCGGACCGCATGATGGACCGCGACCTCACGATCAC GCTCGAGACCGCCGCGAAGGAGCGACTCATCGAGGTCGGCTTCGACCCGTCGCTCGGCGCCCGGCCGCTGCGCCGCGCGG TGCAGCACGAGATCGAGGACCGTCTGTCCGAGCGCATCCTGCAGGGCGAGCTCAACGCGGGCGACCACGTGCACGTCGAC TACGTGGACGGCCAGTTCACGTTCGTCACGACGCAGCGCGAGGGCATCTCGGTCGCGGCCGGCATCGGCACCGGGACCGG CACGCCGGACCTCGCCATCACGAGCGAGTAG Protein sequence : MFERFTDRARRVVVLAQEEAKMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLDAVREQVQDIIGQGQQQPTGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEAVAVGGEAQQS QQAGSTVLDQFGRNLTQAARDGKLDPVIGREKEIERVMQILSRRSKNNPVLIGEPGVGKTAVVEGLAQAIVKGDVPETLK DKQLYTLDLGSLIAGSRYRGDFEERLKKVTKEIRTRGDIITFIDEIHTLVGAGAAEGAIDAASILKPLLARGELQTIGAT TLDEYRKHFEKDAALERRFQPIQVQEPSLPHTINILKGLRDRYEAFHKVSITDGAIVSAANLADRYIADRFLPDKAIDLI DEAGARLRLSILSAPPELREFDERISTVRVAKETAIEDQDFEKAASLRDEEKNLLGERLRLEKQWRSGDVRTTAEVDEGL IAEVLAQATGIPVFKLTEEESSRLVFMEKALHQRVIGQEEAISALSKTIRRTRAGLKDPRRPSGSFIFAGPTGVGKTELA KALAEFLFDDEDALISLDMSEYGEKHTVSRLFGAPPGFVGFEEGGQLTEKVRRKPFSVVLFDEIEKAHPDIFNSLLQILE EGRLTDGQGRVVDFKNTVIIMTTNLGTKDITGAPVGFQVENNAANSYERMKGKVSEELKKNFKPEFLNRVDDTIVFPQLS KPELLQIVDLFVKRLSDRMMDRDLTITLETAAKERLIEVGFDPSLGARPLRRAVQHEIEDRLSERILQGELNAGDHVHVD YVDGQFTFVTTQREGISVAAGIGTGTGTPDLAITSE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_001221597.1 | ATP-dependent protease, ATPase subunit | VFG0079 | Protein | 0.0 | 59 |
| clpC | YP_001221597.1 | ATP-dependent protease, ATPase subunit | VFG0080 | Protein | 4e-154 | 53 |
| clpC | YP_001221597.1 | ATP-dependent protease, ATPase subunit | VFG2084 | Protein | 3e-94 | 41 |
