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Name : phrB (CMM_0534) Accession : YP_001221274.1 Strain : Clavibacter michiganensis NCPPB 382 Genome accession: NC_009480 Putative virulence/resistance : Unknown Product : deoxyribodipyrimidine photo-lyase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0415 EC number : 4.1.99.3 Position : 618856 - 620382 bp Length : 1527 bp Strand : - Note : putative deoxyribodipyrimidine photolyase (NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti MAFF303099]; NP_531913.1| DNA photolyase [Agrobacterium tumefaciens str. C58]). pfam00875, DNA_photolyase, DNA photolyase. This domain binds DNA sequence : ATGAGCGACGACGACGCCCCCGACCACGGATCCGCGGACCGGGAGGGCGCCGAGGAGGCGCACGGCCCGAGCATCGTGTG GCTGCGCGACGACCTCCGCGTGGCCGACAATCCGGCGCTGCACGCGGCCGTCGAGCGGGGCGAGCCCATCGTGGTGCTGT ACGTGCTCGACGAGGAGAGCGACGGGATCCGCCCGCTCGGCGGCGCCGCCCGCTGGTGGCTGCACATGAGCCTGTCGCGC CTCGCGGAGTCGCTGCGGGAGCTCGGATCCGACCTGGTGCTGCGCCGCGGGAAGGCCGCCGACGTCGTCGACGACCTCGT GCGGGAGATCGGCGCGGGCGCGGTGCTGTGGAACCGGCGCTACGGCGGGGCCGAGATCGCGGTCGACACCGCCATCAAGA AGGACCTCGGCGACCGGGGGCTCGACGTCCGCAGCTTCCAGGGATCGCTGCTGGTCGAGCCGTGGACGGTGACGAACAAG CAGGGCGAGCCGTTCCGCGTGTACACGCCGTTCTGGAAGGCCGCGCAGGAGCGGGAGGAGCCGCGGAAGCCGCTGCCCGC GCCGAAGGAGCTCGACGCGCCGCGGGAGGCACCCCGCTCGGACGATCTCGACGGCTGGGGGCTGCTGCCGACGAAGCCCG ACTGGGCGGCCGGCCTCCGCGAGTCGTGCGATCCCGGCGAGGCAGCCGGCCTGCAGCGCCTCGAGGACTTCGTCCACCAC GAGCTCGAGGACTACGCCGCCCAGCGCGACGAGCCCGCGGCGATGACCACGTCGCGGCTGTCGGCGTACCTGCGCTGGGG CGAGGTGAGCCCGTTCCAGGTGTGGCACCGGATCCAGCGCACGCGCGGGAAGAAGGTGGGCGGCGACGAGGTCAACGCCA CCAAGTTCCTCTCCGAGCTCGGATGGCGCGAGTTCAGCTACCACCTGCTGTACCACCAGCCGGATCTCGCGACCCGCAAC TTCGTGCCCCGCTTCGACGCGTTCCCGTGGGACGAGCCGACCGACGAGACGCTCGGCGCGTGGCAGCGGGGCGAGACGGG GGTGCCGCTCGTCGACGCCGGCATGCGCGCGCTCTGGAAGGACGGCCACCTGCACAACCGCGTGCGGATGGTGGTGGCGT CGTTCCTCATCAAGAACCTGCTGATCGACTGGCGCCACGGCGAGCAGTGGTTCTGGGACACGCTCGTGGACGCGGATGCG GCCAACAACGCGGCGAGCTGGCAGTGGGTCGCGGGATCCGGCGCCGACGCCGCCCCCTACTTCCGCGTGTTCAACCCCGT GCTGCAGGGACAGAAGTTCGACCCGTCGGGCGAGTACATCCGCTCGTACGTGCCCGAGCTGGCGCACGCGCCGCGGGACG TCGTGCACGAGCCGTGGAAGGCGATGGGCGACCTCGTCGCGAGCGCGGAGGACGGCGCGGACGACTCGGACGACGGCGGG CTCGCGGCGTACCCGGCGCCGATCGTCGACCTGAAGGAGTCCCGTCAGCGGGCCCTCGCGGCGTACGACGAGATCAAGGA CCGGTGA Protein sequence : MSDDDAPDHGSADREGAEEAHGPSIVWLRDDLRVADNPALHAAVERGEPIVVLYVLDEESDGIRPLGGAARWWLHMSLSR LAESLRELGSDLVLRRGKAADVVDDLVREIGAGAVLWNRRYGGAEIAVDTAIKKDLGDRGLDVRSFQGSLLVEPWTVTNK QGEPFRVYTPFWKAAQEREEPRKPLPAPKELDAPREAPRSDDLDGWGLLPTKPDWAAGLRESCDPGEAAGLQRLEDFVHH ELEDYAAQRDEPAAMTTSRLSAYLRWGEVSPFQVWHRIQRTRGKKVGGDEVNATKFLSELGWREFSYHLLYHQPDLATRN FVPRFDAFPWDEPTDETLGAWQRGETGVPLVDAGMRALWKDGHLHNRVRMVVASFLIKNLLIDWRHGEQWFWDTLVDADA ANNAASWQWVAGSGADAAPYFRVFNPVLQGQKFDPSGEYIRSYVPELAHAPRDVVHEPWKAMGDLVASAEDGADDSDDGG LAAYPAPIVDLKESRQRALAAYDEIKDR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| CD241_0111 | YP_005124380.1 | putative riboflavin biosynthesis protein | Not tested | Not named | Protein | 3e-68 | 42 |
| DIP0113 | NP_938509.1 | riboflavin biosynthesis protein | Not tested | Not named | Protein | 9e-68 | 42 |
