Gene Information

Name : CMM_2820 (CMM_2820)
Accession : YP_001223565.1
Strain : Clavibacter michiganensis NCPPB 382
Genome accession: NC_009480
Putative virulence/resistance : Virulence
Product : Cro/CI family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG1476
EC number : -
Position : 3148824 - 3149030 bp
Length : 207 bp
Strand : +
Note : putative transcriptional regulator, Cro/CI family (NP_639310.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913]; ZP_00225863.1| COG1476: Predicted transcriptional regulators [Kineococcus radiotolerans SRS30216]). pfam0138

DNA sequence :
TTGTCACCCATGCGCAGCGAGGTCAGGGGGCTCCGGACGGCGGCCGGGCTCTCCCAGCAGTCCCTCGCCGACGCGCTCGG
CGTCTCCCGCCAGACGATCAACGCCATCGAGACGGGCCGCTACGACCCGTCGCTCGCGCTCGCCGTGAAGGCGGCCCGCT
TCTTCCACCGATCCGTCGAGGAGGTCTTCCATGTCGAAGACGACTGA

Protein sequence :
MSPMRSEVRGLRTAAGLSQQSLADALGVSRQTINAIETGRYDPSLALAVKAARFFHRSVEEVFHVEDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH2314 YP_254229.1 hypothetical protein Not tested ¥ðSh1 Protein 2e-10 49
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 5e-08 43
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 3e-08 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CMM_2820 YP_001223565.1 Cro/CI family transcriptional regulator VFG2175 Protein 1e-08 43
CMM_2820 YP_001223565.1 Cro/CI family transcriptional regulator VFG2168 Protein 1e-08 43