Gene Information

Name : CMM_2335 (CMM_2335)
Accession : YP_001223080.1
Strain : Clavibacter michiganensis NCPPB 382
Genome accession: NC_009480
Putative virulence/resistance : Virulence
Product : putative two-component system response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2636444 - 2637295 bp
Length : 852 bp
Strand : -
Note : putative two-component system response regulator (NP_825593.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680]; ZP_00062053.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DN

DNA sequence : 
GTGAGCCCCACCTACGATCCCGCGCGCGCCGACGCCGGGCGCCCCGACAGCGCGCGGCCCGATCCCTCGCGGCCGGATCC
GCTGCGCGGCCGCCGCATCCTCGTCGTCGAGGACGACCCCACGGTGAACGAGGTCGTCTGCCGCTACCTCAAGGCCTCGG
GCTTCCAGGTGGAGACCGTCGCCGACGGCCTCGAGGCCGTGCGCGTCGCCACCGAGCGCATGCCCGACCTCGTCGTGCTC
GACCGCATGCTCCCCGGCCTCGACGGCCTCGAGGTGTGCCGCCGGATCCGCGCCCACCACCCCGAGTCGCCCGTCCCCGT
CGTGATGCTCACCGCGCTCGGCCAGGGCGAGGACCGCGTCAACGGCCTCGACGCCGGCGCCGACGACTACCTCGCCAAGC
CCTTCTCGCCGCGCGAGCTGGTGCTCCGCGTGCGCGCCGTCCTCCGCCGCACTGTGCCCGAGGCCGTGCCCGAGCCGCCG
TTCGTCGCGGGGCCGTTCGTGCTCGACCTCGGCGCGCGCGAGATCCACCAGGCCGGCGTCATGCTGTCGCTCACCTCCCG
CGAGTTCGACCTGCTCGCCTTCCTGCTCCGGAACCCGCGCCGCGTCTTCGGGCGCGACGACCTGCTGCGCCAGGTGTGGG
GCTGGGAGATCGGCGACCTCTCCACCGTCACCGTGCACGTGCGGCGCCTGCGGGAGAAGATCGAGGCGGATCCCGCGCAC
CCCGTGCTCCTCGGCACCGTCTGGGGCGTGGGCTACCGCTTCGACCCGGACGCCGCGACGCCCGCCGCACCCGCCGAGGC
CGAGCCCGCCCCCTCCGCCGAGGCCGCCCCCTCCGCCGAGGCCGACGCGTGA

Protein sequence : 
MSPTYDPARADAGRPDSARPDPSRPDPLRGRRILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVL
DRMLPGLDGLEVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRRTVPEAVPEPP
FVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLLRQVWGWEIGDLSTVTVHVRRLREKIEADPAH
PVLLGTVWGVGYRFDPDAATPAAPAEAEPAPSAEAAPSAEADA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-25 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CMM_2335 YP_001223080.1 putative two-component system response regulator AE000516.2.gene3505. Protein 3e-36 48
CMM_2335 YP_001223080.1 putative two-component system response regulator CP000034.1.gene3671. Protein 1e-33 44
CMM_2335 YP_001223080.1 putative two-component system response regulator NC_012469.1.7685629. Protein 3e-27 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CMM_2335 YP_001223080.1 putative two-component system response regulator VFG1390 Protein 1e-28 46
CMM_2335 YP_001223080.1 putative two-component system response regulator VFG1389 Protein 1e-23 43
CMM_2335 YP_001223080.1 putative two-component system response regulator VFG1563 Protein 1e-25 41
CMM_2335 YP_001223080.1 putative two-component system response regulator VFG1702 Protein 1e-25 41