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Name : CMM_1079 (CMM_1079) Accession : YP_001221820.1 Strain : Clavibacter michiganensis NCPPB 382 Genome accession: NC_009480 Putative virulence/resistance : Unknown Product : RND superfamily drug exporter Function : - COG functional category : R : General function prediction only COG ID : COG2409 EC number : - Position : 1234760 - 1237708 bp Length : 2949 bp Strand : + Note : putative drug exporter, RND family (YP_054789.1| putative membrane transport protein [Propionibacterium acnes KPA171202]; NP_824795.1| putative drug exporters of the RND superfamily [Streptomyces avermitilis MA-4680]). actII: Transport protein; Specificit DNA sequence : ATGGCCACGCTTCTGTACCGGCTCGGCCGGATCTCGTTCCTCCACCCGTGGCGCGTCGTCGCCGCGTGGATCCTCGTCCT CGGCATCCTGCTGGGCGGCGGCCTCGCGCTCGGCGGCAAGACCCAGGAGTCGTTCTCGATCCCGGGCACCGAGTCGCAGG AGGCCATCGACCGGCTCGCCGCCGTGTTCCCGCAGGCCGCGGGCGCGAGCGCGCAGATCGTGACCGAGGCACCGGCCGGC GAGAAGGTCACCGACGACGGCCCGAAGGCCGCCATCGAGGCCACCGCGACGGCGGCGGGCGAGGTGCAGGGTGTCGCGAC GGCGCTGTCCCCGTTCTCCGAGTACGCGACCGACGCGGTCTCCGACGACGGCACCGTGGCGATCACGACCGTGCAGTTCT CCGGCCAGAGCGACCAGGTGACGACCGCGACGCTCGACGCGCTGAAGGAGTCGGCGCAGGCGGCGGAGGACGCGGGGCTG ACGGTCTCGTTCGGCGGCCAGGTGTTCCAGGACGTGCACTACGGCGTCACCGTGACCGAGGCGTTCGGCGTGCTGTTCGC GGGACTCGTGCTCGTGCTCACGTTCGGGTCGATGCTCGCGGCCGGCCTGCCGCTCATCGGCGCGCTCGTCGGCGTCGCGG CCTCGGCTGGCGCGCTCATGGCCGCCTCGAGGTTCGTCACGGTGTCGAGCGCGTCGCCGCTGCTCGCCGTGATGATCGGC CTCGCGGTCGGCATCGACTACGCGCTCTTCATCCTCATGCGGCACCGCACGCAGCTCGCGAACGGCATGCCCGTCGAGCG CTCGGCGGCGACCGCGGTGGCCACCGCCGGCAGCGCCGTGATCTTCGCGGGCGTGACGGTGATCATCGCGCTGCTCGGGC TGCTCGTGGTGCAGATCCCGTTCCTCACGGTGATGGGCCTCGGCGCGGCGTTCGCGGTGCTGCTCGCGATGGGCGTCGCG ACGACGCTGCTGCCCGCGATGCTCGGCTTCGCGGGGGAGCGGCTCCGGCCGAAGGAGGGCTCGCGGGCCGCCCGCCGCGC GAAGGCCCAGGCCGAGGGGACGCAGCGCACGCTCGGCGCTCGCTGGGTCAAGATCGTCACGAAGGTGCCGATCATCCCCG TCGTGATCGTCGTCGGCATCGCCGGTCTCCTCGCCGTGCCCGCGTCGCAGCTGCAGCTGGGGCTGCCGAGCGGGGCGACC GAGCCCGCCGGATCGACCAGCCGCGTCGCGTACGACACCGTCTCGGACGCGTTCGGCCCCGGCCACAACGGCCCGCTCGT CGTGCTGGTCGACATCACGCAGACCACCGACCCGATCGGGGTGCTCGGGAAGATCGGCGACGAGATCCGCGGGCTCGACG ACGTGGCCTTCGTCGGCACCGGCACGCCGAACCCGTCGGTGGACACCGCGATCATCCAGGTCGTGCCGGACAGCCCGCCC GAGTCGGCGGAGACCACGGCCCTCATGCAGTCGATCCGCGACCTCGCGCCCGGCCTGCACGACCGCTACGACACGCGCGT CTCCGTCACGGGCACCACGGCCGTGCAGAACGACATCTCGCAGCGGCTCGACCAGGCGCTCGTGCCGTTCGGCATCGTGG TGGTGGGGCTGTCGATCCTCCTGCTGATGATCGTGTTCCGCTCGATCTTCGTGCCCGTGAAGGCCGCGATCGGCTTCCTG CTGAGCGTCGTCGTGTCGTTCGGCACCGTCGTGCTGATCTTCCAGCAGGGCCTCTTCGCGGACGCGCTCGGCGTGACGCC CGGCCCGATCCTCAGCTTCATGCCGATCCTGCTCATGGCGATCCTGTTCGGCCTCGCCATGGACTACGAGGTGTTCCTCG TCTCCGGCATGCGCGAGGACTTCGTGCACCACGGGGACGCCAAGCGCGCGATCGTCACGGGCTTCTCGGGCGCCGCGCGG GTCGTCACGGCCGCCGCGCTCATCATGTTCTTCGTCTTCGCGGCGTTCGTGCCGGAGGGCGCGGGCGTCATCAAGACCAT CGCGCTCGGCCTCGCGGTCGGCATCTTCTTCGACGCGTTCCTCGTGCGCATGACCCTGGTGCCCGCCGCCATGGCGCTGC TCGGGAAGCGGGCGTGGTGGATCCCGCGCTGGCTCGACCGCATCCTCCCGGACGTCGACATCGAGGGCGAGGGCCTCCGC GAGCACCAGGACGACGTCGACTGGGCCCACGCGTCCGGTGCCGCCGTCGCGGCCGAGCGGCTCGTCGTGGGCGTGCCGGG GCGCAGGCTCCAGCCCGTCGACCTGAGCGCACCCGCCGGATCCCTCGTGCTCGTCGAGGGCGCGGTGGCCGACCGACGCC TCCTCGGCGCCACGCTGGGAGCCCGGCTCGCGCCCCTGTCCGGTCGCGCGCACGTCGCCGGCCACCCGCTGGCCTCCGAG GCGGGCCGCGTGCTCACGAGCGTCGCGATGGCCGACCTCGGCCGCGTCGACCGGGTCGACTCCGGCGTCACCGTGGGCGA CCTGCTGGCCGAGCGCATCGATCTGTCCGAGCCGATGGGACGCCGCCCGGGCGCCCGGGCGCGCCAGGCCGAGTGGCTCG GCCGGATCGACCAGGCGGCCGACGCCGCGGGAGCCCGGCGCATCGGCGCCGACGACCCCGTGGGATCGCTCCTGCCGCTC GAGCGCGCCATCGCCCTGACCGCCGTCGCCGCCGCGGGTCGTGCGCCCGTGCTCGTGCTCGACGTGGTGGATCCGTTCCC GGACGCCGCCGCCGAGCGCGCGTTCCTCGCCGCCCTGCCCGCGCTCGTCCACGAGAGCACGACCGTCCTGCTGGGCGCGC CGTGGTTCCCGGACGAGCACGGGATCCCCGGCAGGCCCACCCTGCGCCTCCGCCTCGCCGCGGACGACGCGCCCGCTCCC GCTCCCGACGCCGTCGAGCGCCCCGACATCGACCAGCCCGTCACGACCGGCAAGGAGACCCGCCGATGA Protein sequence : MATLLYRLGRISFLHPWRVVAAWILVLGILLGGGLALGGKTQESFSIPGTESQEAIDRLAAVFPQAAGASAQIVTEAPAG EKVTDDGPKAAIEATATAAGEVQGVATALSPFSEYATDAVSDDGTVAITTVQFSGQSDQVTTATLDALKESAQAAEDAGL TVSFGGQVFQDVHYGVTVTEAFGVLFAGLVLVLTFGSMLAAGLPLIGALVGVAASAGALMAASRFVTVSSASPLLAVMIG LAVGIDYALFILMRHRTQLANGMPVERSAATAVATAGSAVIFAGVTVIIALLGLLVVQIPFLTVMGLGAAFAVLLAMGVA TTLLPAMLGFAGERLRPKEGSRAARRAKAQAEGTQRTLGARWVKIVTKVPIIPVVIVVGIAGLLAVPASQLQLGLPSGAT EPAGSTSRVAYDTVSDAFGPGHNGPLVVLVDITQTTDPIGVLGKIGDEIRGLDDVAFVGTGTPNPSVDTAIIQVVPDSPP ESAETTALMQSIRDLAPGLHDRYDTRVSVTGTTAVQNDISQRLDQALVPFGIVVVGLSILLLMIVFRSIFVPVKAAIGFL LSVVVSFGTVVLIFQQGLFADALGVTPGPILSFMPILLMAILFGLAMDYEVFLVSGMREDFVHHGDAKRAIVTGFSGAAR VVTAAALIMFFVFAAFVPEGAGVIKTIALGLAVGIFFDAFLVRMTLVPAAMALLGKRAWWIPRWLDRILPDVDIEGEGLR EHQDDVDWAHASGAAVAAERLVVGVPGRRLQPVDLSAPAGSLVLVEGAVADRRLLGATLGARLAPLSGRAHVAGHPLASE AGRVLTSVAMADLGRVDRVDSGVTVGDLLAERIDLSEPMGRRPGARARQAEWLGRIDQAADAAGARRIGADDPVGSLLPL ERAIALTAVAAAGRAPVLVLDVVDPFPDAAAERAFLAALPALVHESTTVLLGAPWFPDEHGIPGRPTLRLRLAADDAPAP APDAVERPDIDQPVTTGKETRR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| CMM_0093 | YP_001220832.1 | RND family transporter | Not tested | chp/tomA region | Protein | 7e-75 | 41 |
