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Name : avhB4 (BBta_p0255) Accession : YP_001220565.1 Strain : Genome accession: NC_009475 Putative virulence/resistance : Virulence Product : Type IV secretory pathway AvhB4 protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3451 EC number : - Position : 187001 - 189367 bp Length : 2367 bp Strand : - Note : Evidence: Function of strongly homologous gene; PUBMED: 12169609 DNA sequence : ATGCGTAACGCAGCGCTCAAGACCCGGGAGATCGGGCCCGAAGTCTACCTCCCGTTCGGCCGACATGTCACCGATACCGT GATCAGTCTCACGACCAGGGCCATGCTCACAGTGATCCGGCTCGACGGCACCTCGTTCGAGACCGCCGAGACGGCGGATC TGAACGATCTTCACGCCAAACTGAACCTCACTCTACGCAATGTTGCCGATCCGCGGCTGGCGCTATGGACCCATCTGGTG CGGCGCCGGACGTCAGATTATCCGGACGGTGCATTCCGATCGCCATTTGCAGCCTCGCTTGACGCGCAATATCGCGACCG GCTTCGCAAAGCAGCGCTGTTTCGCAACGATCTCTACGTGACGCTGGTTTGTCATCCCGGTCGCGCGCCCGCCGATGCGG CAGCCGCGTTCTTCCGGCGGCTTGGCCGGAGCGCTGCGGCTTCTCTCGAGGTCGACAGCGACGCCTTGAAGCGGCTCAAC GATGCCACGCGAGATATGGTCGCGGCGTTAGAGCGCTACGGGGCCCATGCTCTCGGATTGGCTGAGCGCGACGGCATCGT ATTCTCGGAGCCAATGGAGCTGTTCCACGCCGTGGCCTCCGGCGAGTGGACGTCAATGCCGTTGCCGCAGGGGCCGATCG GCCCTGCACTCTATTCAAACCGTGTCATTTTCGGCCGCGAAGCCATCGAAACCCGCAGCGCGGGTGGCTCGCGCTTCGCT GGCATGTTTGGACTCAAGGAATATCCGGCGTCCACTAAGCCTGGCCTGTTGAACGCGCTGCTTTCTGCGCCTTTCGAACT TATCCTCACGCAATCCTTCGCGTTCTTGTCCAAATCTGATGCCAAGACGGTGCTGACGCGCAAGCAGAACCAGCTGGTCT CGGCTCAGGATCCGGCGGCCTCGCAGATCGACGAGCTCGCTGACGCCCTCGACGATCTCGAATCCAACAGGTTCGCGCTT GGAGACCATCATCTCTCGTTGTTGATCTACGCCGAGACGCCTTCGCAGCTCCAGGACCACATGAGCGTGGCGCGACGCGT CCTGGCGGATGCGGGTGCCGTGGTGGCGCGCGAAGATCTCGGCCTTGAAGCGGCCTATTGGGCGCAGCTTCCCGGGCTGT TCAAGTATCGGGCACGAACTGGGGCGATCAGCTCGCGGAATTTCGCGGCATTCTCCCCGTTCCATACCTATCCCACAGGA CAGCCTTCCGGCAACCATTGGGGACCGGCGGTCGCGATGCTCAAGACCGCGTCCGGCTCTCCGTTCTATTTCTCGTTCCA TCACGGCGACCTCGGCAACACGTTCATCTGTGGCCCCTCCGGGTCGGGCAAGACCGTCGTGCAGAACTTCCTGCTGTCGC AGGCCGAGCGGCTCGGCGCCACTTACGTCTTCTTCGACAAGGACCGCGGCGCCGAGATTTTCGTCCGTGCCGTCGGCGGC ACCTATCTGACGCTCCACAACGGTATTGCGACCGGCTGTGCGCCGCTCAAGGCGCTGGAGCTAACGCCAGCCAATCTTTC CTTCCTGGGCGCTCTTATCCGGAAGCTCGTTACGCCAGACAACCGTCCGCTGACCGTATCCGAGGAGGAGCGGATCGATT CCGGATTGCGAGCCCTTGTTCACCTGCGGCAGGAGGAACGCTCGTTTGGGGCGCTGCGGGCTTTTCTTGGTCAACAGGAC CGCGAGGGGATCGGCGCCCGGTTGGAGCGATGGTGCCGGGGCGCCCCCTTCGGCTGGGTGCTGGATGGCGAGCAGGATGC CATCGGGCTAGATGCCCGGTTCGTCGGCTTCGACATGACCGATCTCTTGGATCATCCCAGCGTTCGCACGCCGCTCATGA TGTATCTGTTCCACCGCGTCGAGCGCCTGATCGACGGGCGGCGCCTGATCATCGACATCGACGAGTTCTGGAAGGCGCTT GGCGACGGGGCATTTCGGGATCTCGCCAACAACAAGCTCAAGACCATCCGCAAGCAGAATGGCGTCATGGTATTCGGCAC GCAGTCGCCGCGCGACGCGCTGGCTTCCCCGATCGCACACACCATTGTCGAGCAGTGCCCGACGCAGATCTTCCTGCCTA ACGCGCGGGGAACACGCTCGGACTATGTCGACGGCTTCCATCTGACCGACACTGAATTCCGCCTGATCAAGGAGGAGCTC ACGCCTGAAAGCCGGCGGTTCCTGATCAAGCAAGGCCATAACTCAGTGGTCGCAGAACTTGATCTCGGCGGCTTCAACGA TGCACTCGCCGTGTTGTCCGGACGGACCGAGACGGTCGAACTGCTCGACCGCATTCGGGCAGAGGTTGGCGACGATCCAG CGCAATGGCTGCCGGTATTTCACGCGGAACGGGGGACAATCCGATGA Protein sequence : MRNAALKTREIGPEVYLPFGRHVTDTVISLTTRAMLTVIRLDGTSFETAETADLNDLHAKLNLTLRNVADPRLALWTHLV RRRTSDYPDGAFRSPFAASLDAQYRDRLRKAALFRNDLYVTLVCHPGRAPADAAAAFFRRLGRSAAASLEVDSDALKRLN DATRDMVAALERYGAHALGLAERDGIVFSEPMELFHAVASGEWTSMPLPQGPIGPALYSNRVIFGREAIETRSAGGSRFA GMFGLKEYPASTKPGLLNALLSAPFELILTQSFAFLSKSDAKTVLTRKQNQLVSAQDPAASQIDELADALDDLESNRFAL GDHHLSLLIYAETPSQLQDHMSVARRVLADAGAVVAREDLGLEAAYWAQLPGLFKYRARTGAISSRNFAAFSPFHTYPTG QPSGNHWGPAVAMLKTASGSPFYFSFHHGDLGNTFICGPSGSGKTVVQNFLLSQAERLGATYVFFDKDRGAEIFVRAVGG TYLTLHNGIATGCAPLKALELTPANLSFLGALIRKLVTPDNRPLTVSEEERIDSGLRALVHLRQEERSFGALRAFLGQQD REGIGARLERWCRGAPFGWVLDGEQDAIGLDARFVGFDMTDLLDHPSVRTPLMMYLFHRVERLIDGRRLIIDIDEFWKAL GDGAFRDLANNKLKTIRKQNGVMVFGTQSPRDALASPIAHTIVEQCPTQIFLPNARGTRSDYVDGFHLTDTEFRLIKEEL TPESRRFLIKQGHNSVVAELDLGGFNDALAVLSGRTETVELLDRIRAEVGDDPAQWLPVFHAERGTIR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virB4 | YP_001610000.1 | VirB4 protein | Virulence | Not named | Protein | 0.0 | 53 |
| trwK | YP_001610476.1 | TrwK protein | Virulence | Not named | Protein | 1e-139 | 43 |
| trwK | CAD42844.1 | TrwK protein | Not tested | trw-PAI | Protein | 1e-139 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| avhB4 | YP_001220565.1 | Type IV secretory pathway AvhB4 protein | VFG2233 | Protein | 0.0 | 54 |
| avhB4 | YP_001220565.1 | Type IV secretory pathway AvhB4 protein | VFG2259 | Protein | 3e-140 | 42 |
