Gene Information

Name : VC0395_A0370 (VC0395_A0370)
Accession : YP_001216326.1
Strain :
Genome accession: NC_009457
Putative virulence/resistance : Virulence
Product : lipoprotein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 397351 - 401682 bp
Length : 4332 bp
Strand : +
Note : -

DNA sequence :
ATGCCTCTCATATTTCAAATATCACAAAAAGATAATGTCTTTTGTACGATCAACGGGCGTTCAATCGCAACATTTACCGC
TCCCTTTGACGCTAATAAAAATGGCCGTAACACTGATTCTGAAGTTTTATCTTTAATCTCTGCGGATGAGTACCGGGACT
CGCCAGTTCGACAGGAAAATCTCCAAATTTTAATGAAAAATATGGCGACAATACATGGAGATAAAATATCTCTAGTTTTC
CGAAGTACTCTTGATGCCTTGACATTCGAAAATTATTTACGGCACAATTTAGATCTTCCCAAAGACCAATTTTTAGAAGC
AATTACAGAAAAAATCGCCAATGATAATCAGGTCGATAAGCAACCTTCAACTCATGTGCCTAATATCTCTCCATCATTCA
CGCCTGGGACTTCATCTAATTTGAATAGTCCATTCGTTTCTGCTAATGCTGAAGAGTCTTTGAGCTATATACCGACAGAT
GTTATTCCTTCGCTTGGTCGCTTACTTGATAGTCAAGGTCGAGTTATTAATGGTGTTTCATACTTCAGTAATAATACTCG
TGGTATTACTGGTGTAGATAAAACAGGGGCTATTTTAAATGATGGTTCATTTGAATTTTCGTGGGGAGATATTATTAGCT
TTTCAATCGATACATTTGAATTAGGTAGTACTCGAGCTAATAAAACTGATTTTTATATCAGTGAATTAGGTAAGGACAAT
GAGGGTAAGAATGCTGAAGCTTTGATTCATCGTTATGCAAGTATTGATGATTCTAAGCTTATCATTCCAGATAAAGTTAC
GCAGATTTTTTCCCTATACCCTAATGTCATTAATGAAGTGATTTCATTATCATTACCTAATGGCGATATCGAACTTGATA
TTGGAGATGGTAAAACTCAGATTGTACCTGGTGAATTCTTTAAGCAGTTTGATTCTGGATTAGCAGCACTTATCGATCAA
TCTATTTCACCTATATCGAGGTTCAAATTTGAAGACAGTTTGCCTAAGAAAAAGTCAGCAATTGATTCTGAATCTTCACA
AATCCAAGATATTATTAATAAACTCTGGGGTGCAACCGATACCGTACAAGCTAATGGATGGAAAAAAGTCGATCGTTTTC
ATATTTTTCATGACAGTACAAACTTCTACGGTAGTACAGGAAGTGCCCGAGCACAAGCAGCGGTGAATATTGCTAATAGT
GCATTTCCAGTCTTAATGGCTCGTAATGACAATAATTACTGGATTGATTTTGGTAAACCTAAAGCATGGGATTCGAATAG
TCTGGCATTTATTACTGAAGCACCTTCTACAGTTGTGCCTGATAAAGTATCTGAAGATACATCAACCTTTAATTTACCTT
TTATTAGTTTGGGCGAAATTGGTAAAGGCAAGCTGATGGTACTAGGAAATGCGCGATATAACAGTGTCTTAGTCTGTCCT
AATGGATTTAGTTGGGGCGGAACTGTTAAAAATGGTACTTGTAGCTTAAGTAGTGATCGTGATGATATGGCTAATTTTTT
TAGTAATGTCATCCGCTATCTTACGGGAAGTACTTCCAATGATGTTATTGTTGGAACTAATATTCCAGAAGTTTACTTTA
AATCATCTGGCCAAACTATGGGGTCAAAAGCCAATTTTGAACTCGATTCAAGATTCTCTAAGCAAACTCAACAGTTGACT
AGTTTCCATGATTTAGATGTTAATACTATACCTCTTATTATTATCAATGCATACGACTATAAAGGAAAAAACATAAATAG
TCCGTATGATATTCCATTAAGTGCTGATGTAGGCAGTCCGAAATTGTCTCGTTCTGATGTCACTGATTTAATTGATTATA
TAAACAACGGTGGTAGTGTATTAATGATGGAGACTATCATTAATACAAATAACAGTGAGATTTCTCGTTTATTGGACAGT
GCTGGTATTGCTTTTGGCATTGGAAACAGTGTAGTTGCTGACGGTAATGGCCCGAGTGGAGGCCACCCAGATCGCCCACG
TAGTCAGCGAGAGCACGGTATTTGGGTTATTGAGCGATATGCAGCTGTTGAAGACGAGTCTTCTGGTCAACAGACGCTAC
CTTATGTGATTAATAGTGATGGTTCAATTGAGTGGAAGTATATTGTAGAGAATAGGCCCGATGATAAACCTAAACTTGAA
GTCGCGAGTTGGGTTGAATCTGAAGCTGGAGATAAATTAATTACTCACTATGCATTTATTGATGAGTCTCAGCACTGGAA
AAAAGATATTTCAGGTAAAATAATCTATAACGTGGCAGGGAAGCCGGAAGTAGATAATGCATCATTATCTTTGGCTAAAA
ATAAAGTACTTGATGCTTTTAAAAACAGTAGTGGCCAGAGAGCCTACTCTGAATGTAAAAATTCTGAGTTTCATTATGAG
ATTAATTGCTTAGAATATCGTCCAGGTAATTCAATTCCTATTACTGGTGGTTTGTATGTACCCCGATATACTGATATTAA
GTTAGGAGAGTCTGAAGCCAATGCTATGGTAAAGGCGGCTAATCTTGGTACAAATATTCATGCTTTATATCAGCATGAAC
GTTATTTCCGAACTAAAGGAAAGTCGGGAGCCCGTTTAAATAGTGTTGATTTGAATCGAATTTATCAAAATATGTCAGTA
TGGCTTTGGAACGACCTTGATTATCGTTATGATGATAAGCAATCCGATGAGCTTGGATTTAAAGTTTTTACACAGTATTT
GAATTGTTACACTAGTAACAACGCTGGTGGTAATACAACTTGCCCAGAAGAATTGAAAGATGAACTTACTCAGCTAGGTA
TGATTTATGACGAAAAATCAGGAAGCTATGCAGGTCAAATGGATCCAAGTTACCCACTTAATTATATGGAAAAGCCACTG
ACCCGTTTAATGTTAGGGCGCTCATTCTGGGATCTTGATATCAAAGTTGATGTCAGAAAGTACCCCGGTGAAGTCACAAC
AAGATCAGGTGGAGGGGATATTACTCTTGACATGCGTAATAATACGGCAGCTTGGTTTGCGGGTAATAGGCAGCCGACAG
GGCAGTGGGCCGAAGCTCATCAGCCTTTTAGTGTTTCAGTCTCAGGAGAAACATCGCCTGTCACCATCACCATTGCATTG
GCTGATGATTTAACTGGCCGAGAGAAGCATGAGCTTGGTTTAAAGCGTCCTCCTCGCATGAGCAAATCATTTGTTATTGG
CGGCGATAGTCCGAAAATGCAGACTTTTACCGTACCCTATGGTGGGTTAATATATGCACAAGGGGGAAATTCTCAACAGG
TCAAACTAACATTTTCAGGAACTATAGATGCACCGCTCTATATTGACGGTAAGTGGAGAAACCCTCTTTTATCTGGCGCA
CCAATTGGTGAAGTAGTGTCAGACACCTTCATATTTACTGCACCTAAAGCAAATTTAAATGCCGATGGTTATTTGGGGGG
GATCGAACAGTTTGCAAAAGATCTTGATCAATTCTCAGCGGATTTAAACGATTTTTATGCCCGTGATGAAGGTGCGGACG
GTGACAAAAATCGCAAAGCTACTGATAAGTCAATGCCTAATAATCGTCACCATTTCGTCAATGATGTCGCAATAAGTGTT
GGTGCTGCACACTCTGGCTATCCGGTCATGAATGATAGTTTTATTACCAGTAGCCGTAGTTTGAACACTATGCCGCTGAA
CAGCTGGCTGCTTTGGCATGAGGTCGGGCATAATTCAGCAGAAGCTCCTTTTAATGTTGATGGGGCCACAGAAGTTGTAA
ACAACTTACTTGCCTTATATATGCAAGATCGTCATCAAGGAAAAATGTCTCGTGTAGAACAGGATATCCGTTATGCTTTC
GATTTTGTTAATGCTGAGCATGGGCATGCTTGGGGAGCCGGTGGTGCTGGTGAACGTTTAGTTATGTTTGCGCAACTTAA
AGAGTGGGCAGAAACTGAGTTTGATATAAATGACTGGTATAATGATAAGCTACCTGGTTTTTATATTGAAGAAAGCGGAA
TAAAAGGTTGGAACTTGTTTAAACTGATGCATCGGTTAATGAGAAATGAGAACGATGACCAAATCAATATGAAGGGAGAA
AATCAATGTAAGATATCTGGTATTGGTAAAAGTGATCTATTAATGCTTTGTGCATCATATGCCGCTCAGACGGATTTGTC
AGAATTTTTTAAAGCATGGAATCCGGGAAGTAAGGCATTTCTCTATCCAGATGATCCTCAGCCATATTACGAAGGAGGAA
TAACTCCTTCTGGGATTCAGAGAGTCAAATCTTTAAAATTGAATCTTCCCCAAAAAAATCCCCTTTCTATAAACAGTGTT
ACACAACATTAG

Protein sequence :
MPLIFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVLSLISADEYRDSPVRQENLQILMKNMATIHGDKISLVF
RSTLDALTFENYLRHNLDLPKDQFLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTD
VIPSLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGSTRANKTDFYISELGKDN
EGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISLSLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQ
SISPISRFKFEDSLPKKKSAIDSESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANS
AFPVLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKGKLMVLGNARYNSVLVCP
NGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVIVGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLT
SFHDLDVNTIPLIIINAYDYKGKNINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDS
AGIAFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSIEWKYIVENRPDDKPKLE
VASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPEVDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYE
INCLEYRPGNSIPITGGLYVPRYTDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSV
WLWNDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSYAGQMDPSYPLNYMEKPL
TRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTAAWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIAL
ADDLTGREKHELGLKRPPRMSKSFVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGA
PIGEVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDKSMPNNRHHFVNDVAISV
GAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAPFNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAF
DFVNAEHGHAWGAGGAGERLVMFAQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGE
NQCKISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVKSLKLNLPQKNPLSINSV
TQH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0395_A0370 YP_001216326.1 lipoprotein Not tested VPI-1 Protein 0.0 100
VC0845 NP_230493.1 hypothetical protein Not tested VPI-1 Protein 0.0 100
acfD AAK20802.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 100
acfD ACK75646.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 100
acfD ACK75664.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 100
acfD ACK75670.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 100
acfD ACK75655.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 99
acfD ACK75649.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 99
acfD ACK75652.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 98
acfD ACK75658.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 97
acfD ACK75667.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 97
acfD ACK75661.1 accessory colonization factor AcfD Virulence VPI Protein 0.0 96
unnamed CAE85238.1 hypothetical protein Not tested PAI V 536 Protein 0.0 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VC0395_A0370 YP_001216326.1 lipoprotein VFG0106 Protein 0.0 100