Gene Information

Name : tcpE (VC0395_A0361)
Accession : YP_001216317.1
Strain :
Genome accession: NC_009457
Putative virulence/resistance : Virulence
Product : toxin co-regulated pilus biosynthesis protein E
Function : -
COG functional category : N : Cell motility
COG ID : COG1459
EC number : -
Position : 388381 - 389403 bp
Length : 1023 bp
Strand : +
Note : identified by match to protein family HMM PF00482

DNA sequence : 
ATGAAAATTATCTCCAAGAAGTATAGGCTAGAACTTTATTCAATGCTTGTGGACTTATTGAATGATAATATCCCACTCTA
TGATGCATTAAATAAAATACAAAATGAGGGAGTGGGCATCTATGATAAGAATTTTATTAAATCCATTGAATTAATTAAGG
ATAGGATGAAAAGTAATTCATCACTAACGGATGCCTTAACTGGACTAATACCAGATAAAGAAGTTTTGATGATTAATGTT
GCAGAAAACTCAGGTAAGATTTCGAGTGGTATTGCTGCAATACGCAAAAACATTATCGATGCAGATGAGATCAAATCTAA
AGCTATCTCATCTATGATCACGCCTAGCGTGATGCTTATCGTGACTATGGTTGTTATTGCTGGCTATTCAGTAAAAGTAT
TTCCCACATTTGAGTCTGTACTTCCTGTGAGCCGGTGGCCCGGTGTTACCCAAGCACTTTATAACCTTGGATTTTCATTG
TATGAAGGCTTGTGGATCAAAGTTCTTATTTTTGTCGCTATCTTCATTACGATTTTAGTTTTTATGTCTAAAAACATTAC
AGGGAATTTCAGAGATGGTTTTTTAGATAAGCTGCCACCTTTTAATTTTGTAAAGCATATTGCAGCAACAGAATTTTTGG
CCAATATGTCCATGTTGCTAGATAGTCGAGTCCCATTTAAAGAAGGTCTGGACATTGTCGATCATAAAACGACACGCTGG
CTCTCCTCACATTTGCAAAGAATGAAAGCTAACATGCAAGAAGGGCTAGACTACAAACAGGCTCTCGACACCAATTTACT
AGATAAAAAAATGCTCCTGACAATGGCTGTTTATTCAGAACTACCTAATTTTTCGGATGTAATGCAAAAATTAGCTATTG
AAGCCAATATAAATCTACATAAAAAAATTGCCACTTTAGCAGGGGTAATGAAAAATATTTCACTAATAACGTTGGCGTTG
TCTGTGATTTGGATCTTCGGTGCGATCTTTTCGCTCGTTGATAAACTAAGTTCATCTTTATAG

Protein sequence : 
MKIISKKYRLELYSMLVDLLNDNIPLYDALNKIQNEGVGIYDKNFIKSIELIKDRMKSNSSLTDALTGLIPDKEVLMINV
AENSGKISSGIAAIRKNIIDADEIKSKAISSMITPSVMLIVTMVVIAGYSVKVFPTFESVLPVSRWPGVTQALYNLGFSL
YEGLWIKVLIFVAIFITILVFMSKNITGNFRDGFLDKLPPFNFVKHIAATEFLANMSMLLDSRVPFKEGLDIVDHKTTRW
LSSHLQRMKANMQEGLDYKQALDTNLLDKKMLLTMAVYSELPNFSDVMQKLAIEANINLHKKIATLAGVMKNISLITLAL
SVIWIFGAIFSLVDKLSSSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tcpE CAA45463.1 - Virulence VPI Protein 9e-156 100
VC0836 NP_230484.1 toxin co-regulated pilus biosynthesis protein E Virulence VPI-1 Protein 1e-155 100
tcpE YP_001216317.1 toxin co-regulated pilus biosynthesis protein E Virulence VPI-1 Protein 1e-155 100
tcpE AAK20763.1 toxin-coregulated pilus biosynthesis protein E Virulence VPI Protein 9e-156 100
tcpE AAK20793.1 toxin-coregulated pilus biosynthesis protein E Virulence VPI Protein 9e-156 100

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tcpE YP_001216317.1 toxin co-regulated pilus biosynthesis protein E VFG0099 Protein 5e-156 100