Gene Information

Name : tcpD (VC0395_A0358)
Accession : YP_001216314.1
Strain :
Genome accession: NC_009457
Putative virulence/resistance : Virulence
Product : toxin co-regulated pilus biosynthesis protein D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 385595 - 386431 bp
Length : 837 bp
Strand : +
Note : -

DNA sequence : 
TTGGTTAATGTGATTATGAAGATTAGCAGTTTGAAGAAGGGAAGCAATTTCAGTATTAATATAAAAAATATAAAGCTTGA
TAAAAAATTGTTAGTGGCAATTATTTTTTTAGTTTTATCAATACTGGGAGGTGGAGCCTATTTATACTATGAAAATGAGA
AAACGAAAAAGTTAGAGCAGGCAAGATTACAGAAAATTCAAAAAGAGAACTCTGACAAACAAACCTATTTGTCAGATTTT
AAATCGGCTTTTGAAGGTCTTGATTACCAAGCGCTAACTGGTTTTTATGATGTACTCAGATCTGATATCGATTTTTTCAG
GGTAAATAATTGGTTATTAGATGTAATGGACTGTAATGTTAACTGTAATTTAGCCTTTAAACGAGGAAGCTTTGACACCT
TTACTTATTTAGAAATGAATCGAAATGGAGCTGTTATAAAACCACAGTTCGACCAGAATAAGCTCCAGTTTGCAAATGTG
GATTATATATCTGGTTTTCGTTCTATTTATCTCAAAGATCTCACTGAGCAAGAGAGAGATAAGAGTGAAAATATCATTGA
ACAGTGCTCAACAAAACTTTCTGAACTGTATAATTTGCAGTTGTTAATGAAAGAACAGGTGAAATTTAAAATAAATCTTC
CTAGGAATGTAACTTCAATATCGGGTTATGACTGGGTAAAAAATAGTGACATTAAATTCGGTTCTATTGAAATTGAAAAT
ATGCCAGAGAAAAACTTGGGTCTGATGAAAAATATTATGAATAATAGTATGATGATTACGTCTATCTCTTTGCAAAATTC
AAGTTTTAAATCCAAGTTAAATTATTACTGCTATTAA

Protein sequence : 
MVNVIMKISSLKKGSNFSINIKNIKLDKKLLVAIIFLVLSILGGGAYLYYENEKTKKLEQARLQKIQKENSDKQTYLSDF
KSAFEGLDYQALTGFYDVLRSDIDFFRVNNWLLDVMDCNVNCNLAFKRGSFDTFTYLEMNRNGAVIKPQFDQNKLQFANV
DYISGFRSIYLKDLTEQERDKSENIIEQCSTKLSELYNLQLLMKEQVKFKINLPRNVTSISGYDWVKNSDIKFGSIEIEN
MPEKNLGLMKNIMNNSMMITSISLQNSSFKSKLNYYCY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tcpD YP_001216314.1 toxin co-regulated pilus biosynthesis protein D Virulence VPI-1 Protein 2e-117 100
tcpD AAK20760.1 toxin-coregulated pilus biosynthesis protein D Virulence VPI Protein 4e-115 100
tcpD AAK20790.1 toxin-coregulated pilus biosynthesis protein D Virulence VPI Protein 4e-115 100
VC0833 NP_230481.1 toxin co-regulated pilus biosynthesis protein D Virulence VPI-1 Protein 2e-117 100
tcpD CAA45460.1 - Virulence VPI Protein 7e-115 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tcpD YP_001216314.1 toxin co-regulated pilus biosynthesis protein D VFG0096 Protein 9e-118 100