|
Name : VC0395_A0337 (VC0395_A0337) Accession : YP_001216293.1 Strain : Genome accession: NC_009457 Putative virulence/resistance : Unknown Product : DEAD/DEAH box helicase Function : - COG functional category : K : Transcription COG ID : COG1061 EC number : - Position : 357596 - 360535 bp Length : 2940 bp Strand : - Note : identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 DNA sequence : GTGATGAGTGATAGACAAAGTTTTCTGTATTCAGGTCATAAGCTCTCTTCTGGTGGTGCAAACGATCCGCTCCTACCAAG ACTTGTCCAAGCCATTAATCACGCGACTGAAATTGAAATTTCAGTCTCATTCATTCAGCCATCCGGTCTGGATTTACTGT TTGATCCTCTGTTTGATGCTGTGCAAAGTGGTGCTCAGGTAAAACTCCTAACATCAGATTATCTCTCGATTACTCATCCT GTTGCGCTGCGACGCCTAATGTTGCTAACAGAACGCGGCGCTCAGTGTCGTGTATTTGAATGTGGTCAGCACAGCTTTCA TATGAAATCGTACATTTTTGTCCGATGTGAACAGGGAGAAATACTTGAAGGTTGCGCTTGGATTGGTTCCAACAACATCA GCAAAACAGCGTTATTAGACAGCCATGAATGGGCTCTACGTCACGACTTTGAACCACCTGAAACCAGTGCTGCTGCCCTT GAGTTTCTCCATATTCGTCAACAGTTTGCTTCCATTTTCAACCACACAAATAGTAAAGATTTAACGCATACTTGGATTGA TCATTACCTTGAACGCTATCAACAAGCGAAAAAGCAGCACGGCATGCCCATACTGGCCGATAGCCAAGATGAACAGTCAG AACCGCCAGCGCCGAATGCAGTTCAAGTAGAGGCGTTAACCGCATTGAACGCCACTAGAGCCCAAGGATTTTCTCGTGGA TTAGTCGTGCTAGCTACGGGCATGGGCAAAACGTGGTTAGCAGCATTTGATGCTCTACAAACTCAGTCGACAAAAGTCTT GTTCGTTGCGCATAGAGAAGAAATTCTTCTGCAAGCGGAAAAAACCTTCTGTCAGCTTATTCCCAATGCAAAAACGGGTC TCTACAACGGTGTAACGCAAAATACACAAGCGATGCTGCTGTTTGCTTCCGTGGCAACCATAGGTAAACAAAATCACCTG CAACGCTTTGCAGCGGATCACTTTGATTACATTGTGGTGGATGAATTTCATCACGCGGCAGCGAGAAGTTACCGAAACTT ACTCACCTATTTTAAGCCTAAATTTCTCCTCGGCCTAACCGCAACACCGGAACGTTCAGATCAAGCGGATATTCTCTCGC TTTGCGACAGTAATTTAGTCTTTGAACGTAACCTTGTTCATGGAATTGATGAGAAAATTCTGGTTCCTTTTGACTATCAC GGTATCTACGACCAAGCCGTGAACTACCAAGAAATCCCATGGCGTAACGGTAAATTCGACCCAGACTCACTCGATAATGC CCTAGCAACTCAACGCCGTGCCGAACACGTTTACCAGCATTGGCACCAGAAAAAACAAACCCGCACACTGGCTTTTTGTG TTTCTAAAAAACACGCAGACTTCATGGCTGAGTTTTGTCTGAGTAAAGGCATAAAAGCGATTGCGGTTTACAGTGATTCA AAGGTTCGACGTAACCAAGCCTTACAGTGGCTAGATTCAGGAAAAATAGACATCCTTTTCTCCGTCGATCTTTTTAATGA AGGTACCGATCTGCCCGCTATTGATACCATTTTGATGCTTCGTCCAACGGAGTCTAAAATTCTCTTTTTACAGCAGTTGG GACGGGGATTGCGTCGAAGCATTGAAACTCAAAAAAGTAAACTGGTTGTTATTGATTTTATTGGTAATCATGACTCGTTC TTAAATCGTCCAACCACACTCTACAATGTGAGTCATTTAAAAGACGCCTTAGCCAAACACCAACAACAAGCATTACCTGA CGGATGCCATGTCACTTTTGATATCACTTTGCTCAACTTTTGGCAGCAATTAACCCGGAAAATGCGTTTCTCAGTGCAAG ATGAGTATCAGCAACTTGCACACCAGCTCGCACATAGACCAACTGCTAGTGAGTTTTTCTATCATGGAATTGAAATAAGT AAAGTGCGTAAACAAGCGCAAAGCTGGTTTCATTTGGTTGCGAGCCAAGAAAATGATCCCGAGTTGGCTGAGATTGTTAC ACGCTATGGTGATTTTCTTCTGCATGGCATTGAAAGCACCAGCATGAGTAAATCTTTCAAAGCAATTCTACTTGAGGCCT TACTCGAACTGGATGGATTAAGAACTCCGCCGACCTTAGCCACATTGGCTGAATGCAGTTACACTGTTATCGCACGCAGA CCAGACCTCATGGCTGAAGACCTAACTGAAAATGCCAAACAATTTAAAGCAGCAGATAAAGATTGGCTTAACTATTGGCG GAACAACCCTATTAAGGCCTTTACGAACAAAGCAACGAAACAGGCCACTTGGTTTTCCATCGATAGCCAACAACGCTTCG TCGCTAACTTTGATATCCGAGAGCAAGATCTAGAACGGTTACACGATTGTATACAAGAATTGGTTGATCTGCGTTTGGCG GAATATGCTCAGCGACCCAAGCAACATAAAGAAAATCTTATTAAGGCTAAGAGCAAAGCTGCTGTCATTTCATTAATACC TGAACAAAAAACGATAGGAACACCTATCCCATTCTATCCAGAGCTCAAAATTGCCTGTGGCCATTTTAAGCGCGGTTCAG AGCGAGAAGTACAGACTTATTTTGTTCCTGATGGCTATGGATTACTTGATCCCACACGGCATTTTGTCTCGCCAGCCTCT GGTAACTCAATGAATGGCGGTAAAAATCCTATTCAAGATGGTGACTTATTATTGCTTGAGTGGGTGACACCAAGCAGTGC TGGCTCTATATCAAACCTCACCATGGCTATAGAAACTCAAGATGAAACGGGGGATAACCAGTACTTACTGCGGGTAGTAC GTAAAATCGCACCAAACCAGTATGAACTACAAGCACAAAATCCAAGTTATCCAAATATGCCAGCAACCGATGCAATGAAA ACGTTCGCACGGTTAAAAGCTGTGATAAAAAATAATAGTCAGCAATCACAGACTCGATGA Protein sequence : MMSDRQSFLYSGHKLSSGGANDPLLPRLVQAINHATEIEISVSFIQPSGLDLLFDPLFDAVQSGAQVKLLTSDYLSITHP VALRRLMLLTERGAQCRVFECGQHSFHMKSYIFVRCEQGEILEGCAWIGSNNISKTALLDSHEWALRHDFEPPETSAAAL EFLHIRQQFASIFNHTNSKDLTHTWIDHYLERYQQAKKQHGMPILADSQDEQSEPPAPNAVQVEALTALNATRAQGFSRG LVVLATGMGKTWLAAFDALQTQSTKVLFVAHREEILLQAEKTFCQLIPNAKTGLYNGVTQNTQAMLLFASVATIGKQNHL QRFAADHFDYIVVDEFHHAAARSYRNLLTYFKPKFLLGLTATPERSDQADILSLCDSNLVFERNLVHGIDEKILVPFDYH GIYDQAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQHWHQKKQTRTLAFCVSKKHADFMAEFCLSKGIKAIAVYSDS KVRRNQALQWLDSGKIDILFSVDLFNEGTDLPAIDTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVVIDFIGNHDSF LNRPTTLYNVSHLKDALAKHQQQALPDGCHVTFDITLLNFWQQLTRKMRFSVQDEYQQLAHQLAHRPTASEFFYHGIEIS KVRKQAQSWFHLVASQENDPELAEIVTRYGDFLLHGIESTSMSKSFKAILLEALLELDGLRTPPTLATLAECSYTVIARR PDLMAEDLTENAKQFKAADKDWLNYWRNNPIKAFTNKATKQATWFSIDSQQRFVANFDIREQDLERLHDCIQELVDLRLA EYAQRPKQHKENLIKAKSKAAVISLIPEQKTIGTPIPFYPELKIACGHFKRGSEREVQTYFVPDGYGLLDPTRHFVSPAS GNSMNGGKNPIQDGDLLLLEWVTPSSAGSISNLTMAIETQDETGDNQYLLRVVRKIAPNQYELQAQNPSYPNMPATDAMK TFARLKAVIKNNSQQSQTR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0395_A0337 | YP_001216293.1 | DEAD/DEAH box helicase | Not tested | VPI-1 | Protein | 0.0 | 100 |
