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Name : gspD (VC0395_A2306) Accession : YP_001218221.1 Strain : Genome accession: NC_009457 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 2459042 - 2461066 bp Length : 2025 bp Strand : - Note : identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 DNA sequence : GTGAAATATTGGCTGAAAAAAAGTTCATGGCTGTTGGCGGGCAGTTTGCTGTCTACCCCTCTAGCGATGGCAAACGAGTT TAGCGCCAGCTTTAAAGGCACCGACATTCAAGAATTTATCAATATTGTGGGACGCAATCTTGAGAAAACCATCATTGTCG ACCCTTCGGTACGCGGCAAAGTCGATGTGCGCAGTTTTGATACCTTAAACGAAGAGCAATATTACAGTTTCTTCCTCAGT GTGCTCGAAGTGTACGGTTTCGCCGTCGTTGAAATGGATAATGGCGTACTGAAAGTCATCAAATCGAAAGATGCAAAGAC CTCAGCCATTCCGGTGTTGAGTGGTGAAGAGCGCGCCAATGGCGATGAAGTCATTACCCAAGTGGTCGCGGTGAAAAACG TTTCCGTACGCGAGTTGTCCCCTTTGCTGCGCCAACTGATTGATAACGCAGGGGCGGGGAACGTAGTGCACTACGATCCG GCGAACATCATTTTGATCACGGGGCGAGCTGCGGTAGTGAACCGTTTAGCGGAAATTATTCGTCGCGTTGACCAAGCCGG TGACAAAGAGATTGAAGTGGTTGAGCTTAATAATGCATCGGCAGCTGAAATGGTGCGGATTGTTGAAGCGCTCAACAAAA CGACAGACGCGCAAAACACCCCTGAATTCTTAAAGCCCAAGTTTGTGGCAGACGAGCGTACCAACTCGATTTTGATTTCT GGCGATCCTAAAGTGCGCGAGCGCCTCAAGCGTCTGATCAAGCAGTTGGATGTTGAGATGGCGGCCAAAGGCAATAACCG CGTGGTGTATTTGAAATACGCCAAAGCTGAAGATCTGGTCGAAGTACTGAAAGGGGTGTCTGAGAACCTGCAAGCGGAAA AAGGCACCGGACAGCCGACCACTTCAAAACGTAATGAAGTGATGATTGCCGCGCACGCTGACACCAACTCGTTAGTGCTT ACTGCGCCGCAAGACATTATGAATGCGATGCTGGAAGTGATTGGACAGCTAGATATTCGCCGTGCGCAAGTGTTGATTGA AGCGCTGATTGTCGAAATGGCAGAGGGCGATGGGATCAACCTTGGTGTGCAGTGGGGCTCGCTGGAAAGTGGTTCAGTTA TCCAATATGGCAACACTGGCGCGTCGATTGGCAATGTGATGATTGGTCTTGAAGAAGCCAAAGACACAACCCAAACCAAA GCGGTTTATGATACTAATAACAACTTCTTGAGAAATGAAACGACGACCACCAAAGGGGATTACACCAAGTTAGCCTCTGC ATTGTCGAGCATTCAAGGTGCTGCAGTCAGCATCGCGATGGGCGACTGGACGGCCTTAATCAACGCGGTCTCTAATGATT CCAGCTCGAATATCCTGTCATCACCCAGCATTACGGTGATGGATAACGGTGAAGCCTCCTTTATCGTGGGTGAAGAAGTG CCGGTTATCACAGGTTCTACTGCAGGCTCTAATAACGACAACCCATTCCAAACCGTGGATCGTAAAGAAGTCGGTATCAA GCTTAAAGTGGTGCCGCAGATCAACGAAGGTAACTCAGTCCAGCTCAATATTGAGCAAGAAGTCTCGAACGTGTTGGGCG CCAATGGAGCGGTAGACGTGCGTTTTGCGAAGCGTCAGCTCAACACTTCTGTGATGGTGCAAGATGGGCAGATGTTGGTG CTCGGCGGTTTGATTGATGAGCGAGCTCTTGAGAGTGAGTCGAAAGTCCCGCTCTTGGGGGATATTCCTCTGCTGGGTCA ACTGTTCCGCTCAACCAGCTCGCAAGTGGAAAAGAAAAACCTGATGGTGTTTATCAAGCCGACCATTATTCGTGATGGCG TGACGGCCGATGGCATCACCCAACGTAAATACAACTACATCCGCGCCGAGCAACTGTTCCGCGCCGAAAAAGGTTTACGT CTGCTGGATGATGCTAGCGTGCCTGTGTTGCCGAAATTTGGCGATGACCGCCGCCATTCACCTGAAATTCAAGCCTTTAT TGAGCAGATGGAAGCCAAGCAATGA Protein sequence : MKYWLKKSSWLLAGSLLSTPLAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLS VLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSPLLRQLIDNAGAGNVVHYDP ANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILIS GDPKVRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVL TAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTK AVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEV PVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVMVQDGQMLV LGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAEKGLR LLDDASVPVLPKFGDDRRHSPEIQAFIEQMEAKQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 3e-168 | 55 |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-161 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspD | YP_001218221.1 | general secretion pathway protein D | VFG2047 | Protein | 3e-157 | 54 |
