|
Name : VC0395_A1278 (VC0395_A1278) Accession : YP_001217222.1 Strain : Genome accession: NC_009457 Putative virulence/resistance : Resistance Product : AcrB/AcrD/AcrF family transporter Function : - COG functional category : V : Defense mechanisms COG ID : COG0841 EC number : - Position : 1358243 - 1361341 bp Length : 3099 bp Strand : - Note : identified by match to protein family HMM PF00873 DNA sequence : ATGAGTGAACAGAAGCAGACCCCGCCAGAGAATTATGAGAACCAAGGTGTTGCCGCTTACTTCATCAATAATCGCGTGAT CAGTTGGATGGTTTCGCTGATTTTTTTGATTGGAGGGACGGCCGCATTTTTTAATTTAGGACGTTTGGAAGACCCCGCTT TTACCATTAAAGATGCCATGGTGGTGACCTCTTATCCGGGTGCAACTCCTCAGCAAGTGGAAGAGGAAGTGACTTATCCG CTGGAAAAAGCGATTCAGCAATTAACCTATGTTGATGAGGTGAATTCGATTTCGAGCCGTGGTTTATCCCAGATCACGGT GACAATGAAAAACAATTATGGCCCGGATGATTTGCCGCAAATCTGGGATGAGCTGCGGCGTAAAGTGAATGATTTAAAAG GCGCTTTACCGCCGGGTGTGAATCCGCCTTTGGTGATCGATGATTTCGGTGATGTGTATGGCATCTTGTTGGCAGTTACT GGCGAAGGTTACAGCTACAAAGAGCTACTTGATTATGTGGATTATCTGCGCCGTGAATTGGAGTTAATTGATGGCGTCAG TAAAGTCTCAGTCAGCGGGCAGCAGCAAGAGCAGGTTTTCATCGAGATCTCGATGAAACGGATCAGCACGCTGGGAATTT CGCCGCAAACCGTCTTCAATCTGCTCTCGACACAAAACTTAGTCTCGGATGCCGGAGCGATCCGGATCGGCTCTGAGTAT ATTCGCATTCATCCGACAGGTGAGTTTGACGATGTGGAGAAATTGGGCGACCTGATCCTGAGTGAAAGAGGCGCACAAGG GCTGATTTATCTACGCGATGTGGCCGAAGTTAAACGTGGCTACGTGGAAGTTCCAAGTAACGTTATCACCTTTAACGGTA AGCTCGCGCTTAACGTGGGGGTCTCGTTTGCTCAAGGCGTCAACGTGGTGGAAGTCGGGCAACGCTTCGATCGCCGTTTG GCCGAGCTCAAATATCAACAACCGATCGGGATTGATATTGCCGAAGTGTATAGCCAGCCCAAAGAAGTCGATAAATCGGT CAGTGGTTTTGTGGTGAGCCTTGGACAAGCGGTCGCCATCGTTATCATCGTATTATTGTTCTTTATGGGGCTGCGCTCGG GGCTGTTGATTGGTCTTATCCTGCTTTTGACTGTACTGGGCACCTTCATTTTCATGCAGTATTTCAAAATCGACCTACAG CGTATTTCATTGGGCGCGCTGGTTATCGCTTTAGGGATGTTGGTGGATAATGCGATTGTGGTGGTCGAGGGGATTTTGAT TGGCACGCAGAAAGGCCGAACGCGCTTGCAAGCTGCAACGGACATTGTCACCCAAACCAAATGGCCACTGCTCGGGGCGA CAGTGATTGCCGTGACTGCCTTTGCGCCCATTGGCCTGTCGGAAGATGCAACGGGTGAATACTGTGGAACCTTGTTCACG GTATTGCTTATTTCGCTGATGCTGAGTTGGTTTACGGCCATTTCGCTGACGCCATTTTTTGCCGATCTGTTCTTCCGTGG TCAGAAAGCGCCAGCCAGCGGTGAAGAAAGCGATCCCTACCAAGGTTTTATCTTTGTGGTCTATCGCCGATTCCTTGAGT TTTGTATGAGGCGCGCTTGGCTAACGATGGGCGTGTTGGTGCTCGGACTTGCAGCGAGTTTGTATGGCTTTACCAAAGTG AAACAAGCTTTCTTCCCATCATCGACTACCCCTATGTTTATGGTCGATGTTTGGATGCCTGAAGGGACGGATATTCGAGC GACGGATGCCATTTTATTAGAGCTGGAAAAATGGTTGTCGGCTCAAGAAAGTGTCGACAGCGTGACCACTACCGCAGGCA AAGGTCTACAACGCTTCATGCTGACTTACTCACCAGAGAAAAGTTATGCCGCTTACGGTGAGATCACCACACGGGTTACG GACTACCAACAGCTCGCTGCCTTGATGGCGCGTTTTCGGGCGCACTTAGACGCCCGCTATCCTCAGATTAACTACAAGCT GAAACAGATTGAGTTAGGGCCAGGTGGCGGAGCCAAAATTGAAGCGCGCATTGTAGGTTCAGACCCAACGGTACTGCGCA GTATCGCAGCGCAAGTGATGGATGTGATGTACGCTGACCCCGGTGCCTACAACATCCGCCACGATTGGCGTGAACGCACC AAAGTGTTGGAGCCGCAGTTTAATGAAAGCCAAGCGCGTCGTTATGGGATCACCAAGGCGGATGTGGATGAGTTTTTAGC CATGTCATTCTCGGGTAAAACCATAGGGGTGTATCGGGATGGCACCACCTTGATGCCGATTGTGGCACGTTTGCCGGAAG AAGAGCGGGTGGACATTCGTAATATCGAAGGCATGAAAATCTGGAGCCCAGCACTGAGTGAGTATATTCCATTGCAGCAA GTGACTCTTGGTTACGAAATGCGTTGGGAAGATCCGCTGATTGTGCGTAAAAATCGTAAGCGCATGCTGACGGTGATGGC GGACCCAGATTTGTTAGGCGAAGAAACCGCTGCCACGTTACAACAGCGTTTGCAGCCACAGATTGAAGCCATTCCTTTAC CGCCGGGTTATTTCCTTGAATGGGGCGGTGAGTATGAGTCATCCGGTGATGCTAAAGCTTCTTTGTTTAAAACCATGCCA TTGGGTTATTTGTTCATGTTCCTTATCACCGTATTCTTATTTAACTCGGTGAAGGAGTCGCTGATCGTTTGGCTGACAGT ACCTTTGGCGGTGATCGGGGTGACGACAGGTTTGTTGGCGCTGAATACGCCGTTTGGGTTTATGGCCTTGCTCGGCTTCT TGAGTCTTTCGGGTATGTTACTCAAAAACGGCATTGTGTTACTGGATCAGATCGAAATTGAAATGCACTCCGGCAAAGAT CCGTATTTGGCGGTTGTCGATGCGTCTTTGAGCCGTGTTCGCCCCGTCTGTATGGCGGCGGTCACCACCATACTCGGTAT GATCCCATTGCTGCCGGATATTTTCTTCCGGCCTATGGCGGTAACCATCATGTTTGGTTTGGGTTTTGCGACCGTACTGA CTCTGATTGTCGTGCCGGTACTGTATCGCTTATTCCATCATGTAAAAGTCCCACAATAG Protein sequence : MSEQKQTPPENYENQGVAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEEVTYP LEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPGVNPPLVIDDFGDVYGILLAVT GEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEY IRIHPTGEFDDVEKLGDLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRFDRRL AELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLLIGLILLLTVLGTFIFMQYFKIDLQ RISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFT VLLISLMLSWFTAISLTPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYGFTKV KQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKGLQRFMLTYSPEKSYAAYGEITTRVT DYQQLAALMARFRAHLDARYPQINYKLKQIELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERT KVLEPQFNESQARRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEYIPLQQ VTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEAIPLPPGYFLEWGGEYESSGDAKASLFKTMP LGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKD PYLAVVDASLSRVRPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVKVPQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC0395_A1355 | YP_001217299.1 | AcrB/AcrD/AcrF family transporter | Not tested | VPI-2 | Protein | 0.0 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| VC0395_A1278 | YP_001217222.1 | AcrB/AcrD/AcrF family transporter | BAC0428 | Protein | 0.0 | 99 |
| VC0395_A1278 | YP_001217222.1 | AcrB/AcrD/AcrF family transporter | BAC0519 | Protein | 0.0 | 86 |
| VC0395_A1278 | YP_001217222.1 | AcrB/AcrD/AcrF family transporter | BAC0526 | Protein | 0.0 | 58 |
| VC0395_A1278 | YP_001217222.1 | AcrB/AcrD/AcrF family transporter | BAC0425 | Protein | 0.0 | 43 |
