Gene Information

Name : VC0395_A1173 (VC0395_A1173)
Accession : YP_001217119.1
Strain :
Genome accession: NC_009457
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1234200 - 1234901 bp
Length : 702 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGAAGTCTTTATCTCCTGCTCCTTTGGTGGAGCTACAGCAAATTTGTAAACATTACACCAGTGGGCAAAACGTGGTTAA
AGCGCTTGATGGCGTCGACTTAACCATTCGTCACGGTGAATTCTTGGCAATTCTCGGACCTTCGGGATCGGGTAAATCAA
CCCTGATGAACGTACTGGGCTGTTTGGATAAACCTACCGCGGGCCGCTATCAATTGGACGGACATCCGGTCGATAGCCTA
AGCACTCAGCAACTGGCTGCGATCCGCAATCAAAAGATTGGTTTTGTGTTCCAAAGCTTCAACCTATTGGAATACGCCAG
TGCTCTGGATAATGTCGCCCTTCCTTTGGTGTATGCGGGAGTAAAAGCCAAAGATCGCCGTCGACGCGCCACAGAACTCT
TAACTCGAGTTGGCCTTGCGGATCGCTTAGATCACAAACCCAATCAGTTGTCAGGCGGACAAAAACAGCGCGTTGCGATT
GCGCGCGCACTGATCAATCAGCCACAAATTCTGCTGGCAGATGAGCCAACTGGTGCGCTGGATTCAAAATCCGGTGCCGA
AATTGAAGCGCTGTTCAATGAACTGCACCGCGAAGGTCGCACCATTATCGTCGTCACTCATGATAATGAGCTAGCCAAAC
GTACTAAGCGAATTGTGACCATTCGAGATGGGCAAGTCGTCAGTGATGAGCCCACGGCTTAA

Protein sequence : 
MKSLSPAPLVELQQICKHYTSGQNVVKALDGVDLTIRHGEFLAILGPSGSGKSTLMNVLGCLDKPTAGRYQLDGHPVDSL
STQQLAAIRNQKIGFVFQSFNLLEYASALDNVALPLVYAGVKAKDRRRRATELLTRVGLADRLDHKPNQLSGGQKQRVAI
ARALINQPQILLADEPTGALDSKSGAEIEALFNELHREGRTIIVVTHDNELAKRTKRIVTIRDGQVVSDEPTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-34 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VC0395_A1173 YP_001217119.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 4e-59 55
VC0395_A1173 YP_001217119.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-46 51
VC0395_A1173 YP_001217119.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 1e-37 43
VC0395_A1173 YP_001217119.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 3e-39 43