Gene Information

Name : ctxA (VC0395_A1060)
Accession : YP_001217006.1
Strain :
Genome accession: NC_009457
Putative virulence/resistance : Virulence
Product : cholera enterotoxin, A subunit
Function : -
COG functional category : -
COG ID : -
EC number : 2.4.2.36
Position : 1115147 - 1115923 bp
Length : 777 bp
Strand : -
Note : identified by match to protein family HMM PF01375

DNA sequence : 
ATGGTAAAGATAATATTTGTGTTTTTTATTTTCTTATCATCATTTTCATATGCAAATGATGATAAGTTATATCGGGCAGA
TTCTAGACCTCCTGATGAAATAAAGCAGTCAGGTGGTCTTATGCCAAGAGGACAGAGTGAGTACTTTGACCGAGGTACTC
AAATGAATATCAACCTTTATGATCATGCAAGAGGAACTCAGACGGGATTTGTTAGGCACGATGATGGATATGTTTCCACC
TCAATTAGTTTGAGAAGTGCCCACTTAGTGGGTCAAACTATATTGTCTGGTCATTCTACTTATTATATATATGTTATAGC
CACTGCACCCAACATGTTTAACGTTAATGATGTATTAGGGGCATACAGTCCTCATCCAGATGAACAAGAAGTTTCTGCTT
TAGGTGGGATTCCATACTCCCAAATATATGGATGGTATCGAGTTCATTTTGGGGTGCTTGATGAACAATTACATCGTAAT
AGGGGCTACAGAGATAGATATTACAGTAACTTAGATATTGCTCCAGCAGCAGATGGTTATGGATTGGCAGGTTTCCCTCC
GGAGCATAGAGCTTGGAGGGAAGAGCCGTGGATTCATCATGCACCGCCGGGTTGTGGGAATGCTCCAAGATCATCGATGA
GTAATACTTGCGATGAAAAAACCCAAAGTCTAGGTGTAAAATTCCTTGACGAATACCAATCTAAAGTTAAAAGACAAATA
TTTTCAGGCTATCAATCTGATATTGATACACATAATAGAATTAAGGATGAATTATGA

Protein sequence : 
MVKIIFVFFIFLSSFSYANDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVST
SISLRSAHLVGQTILSGHSTYYIYVIATAPNMFNVNDVLGAYSPHPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRN
RGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWIHHAPPGCGNAPRSSMSNTCDEKTQSLGVKFLDEYQSKVKRQI
FSGYQSDIDTHNRIKDEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1457 NP_231100.1 cholera enterotoxin subunit A Not tested CTX Protein 2e-112 100
ctxA YP_001217006.1 cholera enterotoxin, A subunit Virulence CTX Protein 2e-112 100
ctxA YP_004937111.1 cholera enterotoxin, A subunit Virulence CTX Protein 1e-112 100

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ctxA YP_001217006.1 cholera enterotoxin, A subunit VFG0107 Protein 1e-112 100
ctxA YP_001217006.1 cholera enterotoxin, A subunit VFG2037 Protein 3e-96 81