Gene Information

Name : VC0395_0139 (VC0395_0139)
Accession : YP_001214980.1
Strain :
Genome accession: NC_009456
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 162870 - 163526 bp
Length : 657 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGCGTTTACTATTAGTTGAAGATGACACGTTGCTCGGTGAATCAATGCAAGTAGCGTTAAGCCGACAAGGCTATACGGT
TGACTGGCTGGAGCGGGGTGGTGGCGTCGTGACCGCCCTGAAAACCGAGCAATTTACGGCACTGATTTTGGACCTCACCT
TGCCAGATATGGATGGCTTGGAAGTCCTGCGCCAAATTCGGCGAGCGGGTTATACATTGCCTGTCATGATACTCACGGCA
CGGGATGATATCAGTGATCGGGTCAAAGGGTTGGATGGCGGTGCAGATGAGTACATAGGTAAGCCGTTTGCGCTCGAAGA
GCTGCTCGCACGTTTACGCTTGATCATTCGTCGTAGCTCAGGGAGCGCAGAGGAGCTCATCTCCGTTGGGGAACTTGACC
TTTCGCTCTCTAAACAAGAAATCTACTACGCTCAGCAAGCTCTGAAATTAACGCGAAATGAGTACAAAATCCTCGCCAGT
TTGATGACCCAAGCGGGAAGAGTGATGAGTAAAGAGCTTTTGCAGCAAGCACTGCACGGCTGGGATGAAGGCAGCAGTGA
TAACGCAATCGAAGTACATATTCATAATCTGCGCAAAAAATTGCCGGATAATCTGGTTAAAAATGTACGAGGTGTGGGGT
ACATGATTGAAAAATAA

Protein sequence : 
MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGLEVLRQIRRAGYTLPVMILTA
RDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSSGSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILAS
LMTQAGRVMSKELLQQALHGWDEGSSDNAIEVHIHNLRKKLPDNLVKNVRGVGYMIEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 6e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VC0395_0139 YP_001214980.1 DNA-binding response regulator BAC0487 Protein 5e-36 45
VC0395_0139 YP_001214980.1 DNA-binding response regulator BAC0083 Protein 7e-27 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VC0395_0139 YP_001214980.1 DNA-binding response regulator VFG0473 Protein 2e-38 45