Gene Information

Name : DehaBAV1_0621 (DehaBAV1_0621)
Accession : YP_001214084.1
Strain : Dehalococcoides sp. BAV1
Genome accession: NC_009455
Putative virulence/resistance : Virulence
Product : transport system permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 609606 - 610697 bp
Length : 1092 bp
Strand : +
Note : PFAM: transport system permease protein; ABC-3 protein

DNA sequence : 
ATGGGTGTAAATACAAATCTGAATAAGGAAAACTGTCCGGCAGTTCCCGGCGGTTTGCACCCCCATTGGAGGGGGCGGAT
TTTTGCTATGGCCGGGTTGTTTGGTTTGCTGCTTGTGGCGGCTGTTTTTGCTATTTCCTTCGGCTCAGTTGAAGTGCCAT
TTTTTACCACTATAGCTATCTTGATTTCAAAAATTCCTTTCGTACATATTAGCCCTGACTGGACCGTAAATACTCAGGCT
ATTATTTGGGATATCCGTTTGCCCAGAGTGCTGCTGGCTGGAGTGGTGGGTATGGCCTTGGCGGTGGCCGGGGCTACTTA
TCAGGGGCTCTTCCGAAACCCTCTGGCAGACCCGTATCTTATCGGCGTGGCTCAAGGCGCAGCCGTAGGCGCAGTGCTGG
GGCTGATACTGGGTATCGGGTTTGATGTGCTGGGTATTTTTACTACCCCGCTATTTGCTTTTGCAGGGGCTTTTGGGGCG
GTGGGGGTAGTGTATATGCTGGCCAGAGTGGGAAACCGCCTTACGGTGACTACTCTGATACTAGCTGGTGTGGCACTGGG
TTCATTTCTTACGGCTATTGTGTCGTACCTCATTACGGTTAGCGGTGACAAGATTCACTCTGTCATGTTCTGGCTGATGG
GCAGTTTTTCCATGGCCGGTTGGGAGAGTGTAAAAATTGTTATACCTATAGTGATTATAGGCACGCTGGTTATACTCCTG
TTTGCCCGTTCCCTGAACCTTATCCAGCTGGGTGAGGAGCAAGCTCAGGAACTGGGGGTGGATGTGGAGCGGATGAAGAT
TATCCTTCTTACAGCGGCTACCCTGATAACAGCCGCGGCGGTATCTTTTGTGGGTATTATCGGTTTTGTGGGTATCATTG
TTCCGCATGCCATCAGGTTGATATGGGGGGCAGATTATCGTTTCTTGCTGCCTCTTTCGGCTCTGGTAGGGGCGGTTTTC
ATGATACTGGCAGATATTGCTTCCCGCACTCTGGTTGCTCCCTCTGAAATACCGGTAGGGGCTATTACGGCCCTGGTGGG
TGCTCCTTTCTTTCTGTATCTGCTTAGAAAACGCACCAGAATGCTCTTTTAG

Protein sequence : 
MGVNTNLNKENCPAVPGGLHPHWRGRIFAMAGLFGLLLVAAVFAISFGSVEVPFFTTIAILISKIPFVHISPDWTVNTQA
IIWDIRLPRVLLAGVVGMALAVAGATYQGLFRNPLADPYLIGVAQGAAVGAVLGLILGIGFDVLGIFTTPLFAFAGAFGA
VGVVYMLARVGNRLTVTTLILAGVALGSFLTAIVSYLITVSGDKIHSVMFWLMGSFSMAGWESVKIVIPIVIIGTLVILL
FARSLNLIQLGEEQAQELGVDVERMKIILLTAATLITAAAVSFVGIIGFVGIIVPHAIRLIWGADYRFLLPLSALVGAVF
MILADIASRTLVAPSEIPVGAITALVGAPFFLYLLRKRTRMLF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1913 YP_005682168.1 Iron(III) dicitrate transport system permease fecD Virulence PiCp 7 Protein 6e-18 42
CpC231_1907 YP_005684260.1 Iron(III) dicitrate transport system permease fecD Virulence PiCp 7 Protein 6e-18 42
cpfrc_01919 YP_003784319.1 hypothetical protein Not tested PiCp 7 Protein 6e-18 42
CpI19_1928 YP_005686352.1 Iron(III) dicitrate transport system permease fecD Virulence PiCp 7 Protein 3e-18 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DehaBAV1_0621 YP_001214084.1 transport system permease VFG0922 Protein 3e-22 41