Gene Information

Name : OmpR (PTH_0450)
Accession : YP_001211000.1
Strain : Pelotomaculum thermopropionicum SI
Genome accession: NC_009454
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 431086 - 431763 bp
Length : 678 bp
Strand : +
Note : consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGGAAGCGAAGATTCTGGTTATTGACGACGACCGGAAGATAACCGCCATGCTGCGCCGCTGCCTGGTCTTTGAAGGCTT
TGAGGTGCAGACGGCGGCAGGAGGGGAGGAAGGCCTGCGCCTTGCCGCCGCCTGGAAGCCCGACCTGGTGGTGCTGGACG
TGCTCATGCCCGGCACAGACGGCTGGGAGGTGTGCCGCAGGCTTCGTGCCGGCAGCAGCCTGCCCATACTGATGCTCACC
GCCAAAGATGAGGTGGCCGACCGGGTGAAGGGGCTGGACCTGGGCGCCGACGACTACCTGGTCAAGCCCTTTGCCCTGGA
GGAACTGCTGGCCCGGATCAGGGCCCTCCTGCGCAGGAGCAGGCAGGCCGATACGGCCATGCGGCCCCTGGTGTACGCCG
ATCTGACGCTCGACCATGCCACCCGGGAGGTCCGCCGCGGCGGCCGCCCGATTCAGCTTACGGCAAGGGAATTCGAATTG
CTGGCCCTGTTTATGGAGCACCCCCGCCAGGTGCTGACGCGGGACCAGATCATGGACAGGGTGTGGGGGATTGACTACGG
CGGCGAGTCGAACGTTCTGGAGGTATATGTCGGGATGCTCCGGCAAAAGCTGGAGGAAGGCGGGGAAAAGAGGATTATCC
ACACCGTTCGCGGGGTGGGCTACGTTTTGAAGGAATAG

Protein sequence : 
MEAKILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAAWKPDLVVLDVLMPGTDGWEVCRRLRAGSSLPILMLT
AKDEVADRVKGLDLGADDYLVKPFALEELLARIRALLRRSRQADTAMRPLVYADLTLDHATREVRRGGRPIQLTAREFEL
LALFMEHPRQVLTRDQIMDRVWGIDYGGESNVLEVYVGMLRQKLEEGGEKRIIHTVRGVGYVLKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-29 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-28 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OmpR YP_001211000.1 response regulator BAC0083 Protein 2e-35 48
OmpR YP_001211000.1 response regulator BAC0125 Protein 2e-34 46
OmpR YP_001211000.1 response regulator BAC0638 Protein 3e-28 46
OmpR YP_001211000.1 response regulator BAC0347 Protein 2e-30 45
OmpR YP_001211000.1 response regulator BAC0197 Protein 2e-33 45
OmpR YP_001211000.1 response regulator AE000516.2.gene3505. Protein 3e-33 45
OmpR YP_001211000.1 response regulator BAC0308 Protein 3e-33 44
OmpR YP_001211000.1 response regulator BAC0111 Protein 5e-34 44
OmpR YP_001211000.1 response regulator HE999704.1.gene1528. Protein 9e-33 43
OmpR YP_001211000.1 response regulator NC_013450.8614146.p0 Protein 7e-30 42
OmpR YP_001211000.1 response regulator NC_002951.3238224.p0 Protein 7e-30 42
OmpR YP_001211000.1 response regulator NC_007793.3914065.p0 Protein 7e-30 42
OmpR YP_001211000.1 response regulator NC_002758.1121390.p0 Protein 7e-30 42
OmpR YP_001211000.1 response regulator NC_010079.5776364.p0 Protein 7e-30 42
OmpR YP_001211000.1 response regulator NC_002952.2859858.p0 Protein 7e-30 42
OmpR YP_001211000.1 response regulator NC_007622.3794948.p0 Protein 7e-30 42
OmpR YP_001211000.1 response regulator NC_003923.1003417.p0 Protein 7e-30 42
OmpR YP_001211000.1 response regulator CP001485.1.gene721.p Protein 2e-21 42
OmpR YP_001211000.1 response regulator CP000034.1.gene3671. Protein 4e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OmpR YP_001211000.1 response regulator VFG1390 Protein 1e-47 59
OmpR YP_001211000.1 response regulator VFG1386 Protein 1e-40 49
OmpR YP_001211000.1 response regulator VFG1389 Protein 7e-33 49
OmpR YP_001211000.1 response regulator VFG0596 Protein 1e-29 44