Gene Information

Name : OmpR (PTH_2685)
Accession : YP_001213235.1
Strain : Pelotomaculum thermopropionicum SI
Genome accession: NC_009454
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2790276 - 2790962 bp
Length : 687 bp
Strand : -
Note : consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence :
ATGGCTTCAAACACCATTCTGGTTGTGGACGATGAAGAGCTGGTTCAGGACCTGATCAGGCTGTACCTGGAAAAAGAAGG
GTTTAGGGTGGAGGTGGCCCGGGACGGGGAGGAGGCGCTGGCAAAGCTGGGCTTTGCAAATCCCGACCTGGTCATCCTTG
ACATCATGCTGCCGAAAATGGACGGCTGGGCGGTGTGCCGGGAGATCCGGAAAACCATGGCCACTCCCATCATCATGCTT
ACGGCCAAGGGAGAAGAATTTGACCGGGTGCTGGGGCTGGAACTGGGGGCGGACGACTACGTTTGCAAACCTTTCAGCCC
GATCGAGCTGGTGGCGCGGATTAAGGCCGTGCTGCGCCGCGCCCGGGGCGGCAGGGACAGTCCGAAGGTGTTGAGCTTTC
CCGGCCTGGTCGTGGACTATAGCGGCCACCGGGTCGAGGTGGACGGTCGCGAGGTGGCCCTGGCGCCCAAAGAGTTTGAA
CTGCTGTGGTTCCTGGCGAGCCATCCGGGGCAGCTTTACAGCCGGGAGCAGCTTTTAAAAAACGTCTGGGCCTACGACTA
CCTGGGCGACACCCGCACGGTGGACACCCACATCAAGCGCCTGCGCGAGAAACTGGAGGCCGGGTCGGAGAAGCGGTACA
TCAGGACTGTTTGGGGCCGGGGCTACAAGTTCGAGGTGACCGGATAA

Protein sequence :
MASNTILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFANPDLVILDIMLPKMDGWAVCREIRKTMATPIIML
TAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLRRARGGRDSPKVLSFPGLVVDYSGHRVEVDGREVALAPKEFE
LLWFLASHPGQLYSREQLLKNVWAYDYLGDTRTVDTHIKRLREKLEAGSEKRYIRTVWGRGYKFEVTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
mprA YP_005680459.1 response regulator mprA Not tested PiCp 3 Protein 1e-26 43
mprA YP_005682550.1 response regulator mprA Not tested PiCp 3 Protein 1e-26 43
tcsR1 YP_003782583.1 two-component system transcriptional regulatory protein Not tested PiCp 3 Protein 1e-26 43
mprA YP_005684640.1 response regulator mprA Not tested PiCp 3 Protein 1e-26 43
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-40 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-39 43
CDB402_0209 YP_005126722.1 two-component system response regulator Not tested Not named Protein 3e-25 43
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OmpR YP_001213235.1 response regulator NC_012469.1.7686381. Protein 6e-45 49
OmpR YP_001213235.1 response regulator NC_002952.2859905.p0 Protein 3e-48 49
OmpR YP_001213235.1 response regulator NC_009782.5559369.p0 Protein 2e-48 49
OmpR YP_001213235.1 response regulator NC_002951.3237708.p0 Protein 2e-48 49
OmpR YP_001213235.1 response regulator NC_003923.1003749.p0 Protein 2e-48 49
OmpR YP_001213235.1 response regulator NC_002758.1121668.p0 Protein 2e-48 49
OmpR YP_001213235.1 response regulator NC_009641.5332272.p0 Protein 2e-48 49
OmpR YP_001213235.1 response regulator NC_013450.8614421.p0 Protein 2e-48 49
OmpR YP_001213235.1 response regulator NC_007793.3914279.p0 Protein 2e-48 49
OmpR YP_001213235.1 response regulator NC_007622.3794472.p0 Protein 3e-48 49
OmpR YP_001213235.1 response regulator NC_002745.1124361.p0 Protein 2e-48 49
OmpR YP_001213235.1 response regulator NC_012469.1.7685629. Protein 2e-46 48
OmpR YP_001213235.1 response regulator HE999704.1.gene2815. Protein 5e-46 48
OmpR YP_001213235.1 response regulator AF155139.2.orf0.gene Protein 2e-46 46
OmpR YP_001213235.1 response regulator FJ349556.1.orf0.gene Protein 1e-46 46
OmpR YP_001213235.1 response regulator AF162694.1.orf4.gene Protein 4e-41 46
OmpR YP_001213235.1 response regulator NC_011595.7057856.p0 Protein 2e-41 45
OmpR YP_001213235.1 response regulator NC_010410.6002989.p0 Protein 2e-41 45
OmpR YP_001213235.1 response regulator AM180355.1.gene1830. Protein 2e-44 45
OmpR YP_001213235.1 response regulator CP001918.1.gene5135. Protein 1e-27 45
OmpR YP_001213235.1 response regulator AE000516.2.gene3505. Protein 6e-39 45
OmpR YP_001213235.1 response regulator NC_010400.5986590.p0 Protein 2e-40 44
OmpR YP_001213235.1 response regulator EU250284.1.orf4.gene Protein 1e-42 44
OmpR YP_001213235.1 response regulator CP000647.1.gene4257. Protein 2e-31 44
OmpR YP_001213235.1 response regulator CP000034.1.gene3834. Protein 6e-32 44
OmpR YP_001213235.1 response regulator CP001138.1.gene4273. Protein 2e-31 44
OmpR YP_001213235.1 response regulator BAC0533 Protein 2e-31 44
OmpR YP_001213235.1 response regulator NC_002695.1.915041.p Protein 6e-32 44
OmpR YP_001213235.1 response regulator DQ212986.1.gene4.p01 Protein 6e-44 43
OmpR YP_001213235.1 response regulator CP004022.1.gene3215. Protein 2e-34 43
OmpR YP_001213235.1 response regulator CP000647.1.gene2531. Protein 1e-40 43
OmpR YP_001213235.1 response regulator BAC0596 Protein 3e-40 43
OmpR YP_001213235.1 response regulator CP001918.1.gene3444. Protein 2e-40 43
OmpR YP_001213235.1 response regulator CP001138.1.gene2239. Protein 3e-40 43
OmpR YP_001213235.1 response regulator BAC0039 Protein 1e-40 43
OmpR YP_001213235.1 response regulator CP000034.1.gene2186. Protein 1e-40 43
OmpR YP_001213235.1 response regulator NC_002695.1.916589.p Protein 1e-40 43
OmpR YP_001213235.1 response regulator AE015929.1.gene1106. Protein 3e-37 42
OmpR YP_001213235.1 response regulator NC_014475.1.orf0.gen Protein 6e-42 42
OmpR YP_001213235.1 response regulator NC_005054.2598277.p0 Protein 6e-42 42
OmpR YP_001213235.1 response regulator AE016830.1.gene1681. Protein 2e-40 42
OmpR YP_001213235.1 response regulator BAC0197 Protein 8e-37 42
OmpR YP_001213235.1 response regulator CP001485.1.gene721.p Protein 2e-30 42
OmpR YP_001213235.1 response regulator AF130997.1.orf0.gene Protein 2e-39 41
OmpR YP_001213235.1 response regulator CP000675.2.gene1535. Protein 2e-39 41
OmpR YP_001213235.1 response regulator CP000034.1.gene3671. Protein 2e-36 41
OmpR YP_001213235.1 response regulator CP004022.1.gene1676. Protein 5e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OmpR YP_001213235.1 response regulator VFG1389 Protein 6e-33 45
OmpR YP_001213235.1 response regulator VFG1563 Protein 8e-41 43
OmpR YP_001213235.1 response regulator VFG1702 Protein 7e-40 43
OmpR YP_001213235.1 response regulator VFG0596 Protein 4e-35 41
OmpR YP_001213235.1 response regulator VFG1386 Protein 2e-35 41