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Name : lysS (DNO_0938) Accession : YP_001209830.1 Strain : Dichelobacter nodosus VCS1703A Genome accession: NC_009446 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 980358 - 981854 bp Length : 1497 bp Strand : - Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGAGTCACAATGAAAAAATACAAGATGAAAATAAGTTGATTGCCGAACGCCGGCAGAAATTGCAAAAAATCCGCGATAC GCAAAAAATTGCGTTTCCTAATGATGCGCGTCCCACGCATAAAGCCGCGCAATTGCATCGCGATTTTGATCACGGCGATG AAGCCGCTTTATCGCAAGCAGGAACCGTTGCCATTGCCGGACGCATGATGGGAAAACGGGTGATGGGAAAAGCCAGTTTT GTGCATGTTCAAGATGGATCTGGTGAACAAATTCAATTGTACGTTTCCAGCGATGCGTTAACCGAGGAAGTTTATGAAGA ATTTAAAACGTGGGACGTCGGCGACATTATTTTTGCGTCCGGTTCTCTTTTTCGCACTAAAACCGGCGAGTTAACCGTAC AAACAAACGCCATTCGTTTATTAACAAAATCATTGCGCCCGTTGCCGGATAAATTCCACGGTTTAACTGACCAAGAAATT CGTTATCGTCAACGTTATGTGGATTTAATGGTTAATGCGCAAAGTCGCGATGTTTTTAAAGCGCGGTCAAAAATTATCAG TTATATCCGCCATTTCTTTGAAGCGCGGGACTTTTTAGAAGTGGAAACGCCGATGATGCACCCAATTCCCGGTGGCGCCG CGGCAAAACCGTTTATTACGCATCATAATGCTTTAGATATGCCGCTTTATTTGCGCATTGCGCCGGAATTGTATTTAAAA CGGCTGGTGGTAGGCGGTTTTGAGCGCGTTTTTGAAATTAACCGCAATTTCCGTAATGAAGGCGTATCCGCGCGGCATAA TCCCGAGTTTACTATGTTGGAGTTTTATCAAGCTTATGCCGATTACAACGATTTGATGGATTTAAGCGAAGTATTATTCC AAGGTTTGGCGCAAACCATTTTGGGCACGACGAAATTTGATTATCAAGGAACGGAAATCGATTTTTCACAATTCCGACGT TTGCCGATGCGCGATGCCGTTTGCCAATACGTTCCCGAAGCGGCAAATATTTTAGAAGACGCGCCGAAAATGGTGCAATT GTTAAAAGAAAAATTCCATATTGACGCGGGCAATGAAAGCGATTGCGGCAAATTGATGACGATGATTTTTGAAGAAGGCG TGGAACATTTATTAATTCAACCGACATTCGTCATCGAATATCCGGCGGTGGTTTCACCTTTATCACGGCGCAATGATGAA AATCCAGACATTACCGATCGTTTTGAACTCTTTATTGGCGGACGCGAAATTGCCAACGGCTTTTCCGAACTCAACGATGC CGAAGATCAAGCCGAACGCTTTAAAGAACAAGCTGCTGCATTTGAAGCCGGCGATGAAGAAGCAATGCATTATGACGGTG ATTTCGTGCGCGCGTTGGAATACGGTTTGCCGCCCACCGCGGGTCAAGGCATTGGCATTGATCGTTTAGTGATGTTATTG ACCAATGCGCCTTCAATTCGTGATGTGTTGTTATTCCCTCATATGCGTCCCGAGTAG Protein sequence : MSHNEKIQDENKLIAERRQKLQKIRDTQKIAFPNDARPTHKAAQLHRDFDHGDEAALSQAGTVAIAGRMMGKRVMGKASF VHVQDGSGEQIQLYVSSDALTEEVYEEFKTWDVGDIIFASGSLFRTKTGELTVQTNAIRLLTKSLRPLPDKFHGLTDQEI RYRQRYVDLMVNAQSRDVFKARSKIISYIRHFFEARDFLEVETPMMHPIPGGAAAKPFITHHNALDMPLYLRIAPELYLK RLVVGGFERVFEINRNFRNEGVSARHNPEFTMLEFYQAYADYNDLMDLSEVLFQGLAQTILGTTKFDYQGTEIDFSQFRR LPMRDAVCQYVPEAANILEDAPKMVQLLKEKFHIDAGNESDCGKLMTMIFEEGVEHLLIQPTFVIEYPAVVSPLSRRNDE NPDITDRFELFIGGREIANGFSELNDAEDQAERFKEQAAAFEAGDEEAMHYDGDFVRALEYGLPPTAGQGIGIDRLVMLL TNAPSIRDVLLFPHMRPE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-134 | 58 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-84 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001209830.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 6e-135 | 58 |
